Browse Element(s) Details


Os.11804.1.S1_at

Description gb:CB624264
DB_XREF= gi:29619252
DB_XREF=OSIIEa12L10.r
CLONE=OSIIEa12L10
TID=Os.11804.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.11804 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_197451.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1491011/11Tryptophan/tyrosine permease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14880Os.49994.1.S1_at11/113+8085393..8087434expressed protein
LOC_Os03g14880Os.49994.1.S2_at11/113+8085393..8087434expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_s_at11/113+8091183..8096795expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_at11/113+8091183..8096795expressed protein
LOC_Os03g14890Os.50208.1.S1_at10/113+8091183..8096795expressed protein
LOC_Os03g14900Os.21188.1.A1_at11/113+8101302..8105056NB-ARC domain containing protein, expressed
LOC_Os03g14900Os.12301.1.S1_at1/113+8101302..8105056NB-ARC domain containing protein, expressed
LOC_Os03g14910Os.11804.1.S1_at11/113+8109465..8113280Tryptophan/tyrosine permease family protein, expressed
LOC_Os03g14920OsAffx.12868.1.S1_at11/113+8114067..8115327hypothetical protein
LOC_Os03g14920OsAffx.22904.1.S1_at1/113+8114067..8115327hypothetical protein
LOC_Os03g14920OsAffx.22904.1.S1_x_at1/113+8114067..8115327hypothetical protein
LOC_Os03g14930NANA3+8120974..8122371retrotransposon protein, putative, unclassified
LOC_Os03g14940NANA3+8123291..8124148retrotransposon protein, putative, unclassified
LOC_Os03g14950OsAffx.12869.1.S1_s_at11/113+8131605..8133696Patatin-like phospholipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0005302molecular_functionL-tyrosine transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11804.1.S1_at--1132--9711Chr03:8112688..8112712 (25 bp)
TAATTGCAGCTACCGTTCCGAATTC
LOC_Os03g14910
Os.11804.1.S1_at--740--5211Chr03:8112707..8112731 (25 bp)
GAATTCATTCTCCATTGCTACTGAC
LOC_Os03g14910
Os.11804.1.S1_at--385--4851Chr03:8112723..8112859 (25 bp)
GCTACTGACATTGCAGGCGGTTACT
LOC_Os03g14910
Os.11804.1.S1_at--747--4671Chr03:8112851..8112875 (25 bp)
GCGGTTACTGCATGACCATCTTGTA
LOC_Os03g14910
Os.11804.1.S1_at--6--551Chr03:8112907..8112931 (25 bp)
ATCGCCTCCAGGATGTCAGATTCGA
LOC_Os03g14910
Os.11804.1.S1_at--487--5411Chr03:8112946..8112970 (25 bp)
GAAGCGGAATCATCTGTCGCCGGTG
LOC_Os03g14910
Os.11804.1.S1_at--946--5671Chr03:8112985..8113009 (25 bp)
GACTTGACTAGTGCAAAGCCAGTTT
LOC_Os03g14910
Os.11804.1.S1_at--720--8791Chr03:8113025..8113049 (25 bp)
TGTTCTCTGTGCTCATGGTCTTTGA
LOC_Os03g14910
Os.11804.1.S1_at--959--5111Chr03:8113050..8113074 (25 bp)
GCAAATGTCCCAAGATTTCGTTAGT
LOC_Os03g14910
Os.11804.1.S1_at--205--6791Chr03:8113069..8113093 (25 bp)
GTTAGTTTTCAGTCCTATCTCCTTG
LOC_Os03g14910
Os.11804.1.S1_at--618--7431Chr03:8113198..8113222 (25 bp)
GTGTAGCTTGCATATCTCCTGAAAA
LOC_Os03g14910
Target Sequence 
TAATTGCAGCTACCGTTCCGAATTCATTCTCCATTGCTACTGACATTGCAGGCGGTTACTGCATGACCATCTTGTATGGC
GTTCTTCCTCCATTGATGGCGTGGGCTATCGCCTCCAGGATGTCAGATTCGAGAGCTGGATCTGTCGAAGCGGAATCATC
TGTCGCCGGTGGCAGTGGCAATGTGGACTTGACTAGTGCAAAGCCAGTTTTAGTAGGGATGGGGGTGTTCTCTGTGCTCA
TGGTCTTTGAGCAAATGTCCCAAGATTTCGTTAGTTTTCAGTCCTATCTCCTTGCATGGACANGGCTAGATTGCAGTATA
GAAAGAAGTAGCTGCTAGCAAGTGTACACNGAACTAATGATTCAGAGAATAATCGTTAGGTTTAAACATGTAATTTGTCA
GTGTAGCTTGCATATCTCCTGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis