Browse Element(s) Details


OsAffx.12869.1.S1_s_at

Description tigr:9631.m01436
TID=OsAffx.12869.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Patatin-like phospholipase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1495011/11Patatin-like phospholipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14910Os.11804.1.S1_at11/113+8109465..8113280Tryptophan/tyrosine permease family protein, expressed
LOC_Os03g14920OsAffx.12868.1.S1_at11/113+8114067..8115327hypothetical protein
LOC_Os03g14920OsAffx.22904.1.S1_at1/113+8114067..8115327hypothetical protein
LOC_Os03g14920OsAffx.22904.1.S1_x_at1/113+8114067..8115327hypothetical protein
LOC_Os03g14930NANA3+8120974..8122371retrotransposon protein, putative, unclassified
LOC_Os03g14940NANA3+8123291..8124148retrotransposon protein, putative, unclassified
LOC_Os03g14950OsAffx.12869.1.S1_s_at11/113+8131605..8133696Patatin-like phospholipase family protein, expressed
LOC_Os03g14959NANA3+8138940..8139888NA
LOC_Os03g14968NANA3+8142515..8142677NA
LOC_Os03g14980Os.18899.1.S1_at11/113+8144880..8153948expressed protein
LOC_Os03g14980OsAffx.18788.1.S1_at1/113+8144880..8153948expressed protein
LOC_Os03g14990Os.17891.1.S1_at11/113+8156809..8160796Chorismate synthase 2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12869.1.S1_s_at--1126--8451Chr03:8133544..8133568 (25 bp)
TGTGGAGTAAGGACATGTAGGCCCT
LOC_Os03g14950
OsAffx.12869.1.S1_s_at--615--9551Chr03:8133570..8133594 (25 bp)
TCTTTCTTCTTGCTTTCGCTGGAAT
LOC_Os03g14950
OsAffx.12869.1.S1_s_at--160--9571Chr03:8133574..8133598 (25 bp)
TCTTCTTGCTTTCGCTGGAATCCTG
LOC_Os03g14950
OsAffx.12869.1.S1_s_at--298--10731Chr03:8133579..8133603 (25 bp)
TTGCTTTCGCTGGAATCCTGCTGCA
LOC_Os03g14950
OsAffx.12869.1.S1_s_at--523--4711Chr03:8133587..8133611 (25 bp)
GCTGGAATCCTGCTGCATTTTTTAC
LOC_Os03g14950
OsAffx.12869.1.S1_s_at--991--3031Chr03:8133592..8133616 (25 bp)
AATCCTGCTGCATTTTTTACGTGGC
LOC_Os03g14950
OsAffx.12869.1.S1_s_at--1159--4931Chr03:8133601..8133625 (25 bp)
GCATTTTTTACGTGGCAGAGTGGCA
LOC_Os03g14950
OsAffx.12869.1.S1_s_at--907--1911Chr03:8133610..8133634 (25 bp)
ACGTGGCAGAGTGGCATTGCTCCAA
LOC_Os03g14950
OsAffx.12869.1.S1_s_at--130--6131Chr03:8133618..8133642 (25 bp)
GAGTGGCATTGCTCCAAGAAGCATT
LOC_Os03g14950
OsAffx.12869.1.S1_s_at--1028--4771Chr03:8133628..8133652 (25 bp)
GCTCCAAGAAGCATTTTGCCAATGG
LOC_Os03g14950
OsAffx.12869.1.S1_s_at--226--10351Chr03:8133641..8133665 (25 bp)
TTTTGCCAATGGGAAATTCGACTTG
LOC_Os03g14950
Target Sequence 
TGTGGAGTAAGGACATGTAGGCCCTCTCTTTCTTCTTGCTTTCGCTGGAATCCTGCTGCATTTTTTACGTGGCAGAGTGG
CATTGCTCCAAGAAGCATTTTGCCAATGGGAAATTCGACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12869.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis