Browse Element(s) Details


Os.19079.1.S1_at

Description gb:AK073965.1
DB_XREF= gi:32983988
TID=Os.19079.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072A13, full insert sequence.
FL= gb:AK063897.1 gb:AK073965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6913011/11Dynamin-related protein 3A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69100Os.4875.1.S1_at11/111+40494589..40497025expressed protein
LOC_Os01g69110Os.50224.1.S1_at11/111+40497771..40500139expressed protein
LOC_Os01g69120Os.27831.1.S1_at10/111+40502554..40509529expressed protein
LOC_Os01g69130Os.19079.1.S1_at11/111+40509609..40517730Dynamin-related protein 3A, putative, expressed
LOC_Os01g69140Os.55111.1.S1_at2/111+40519858..40521570regulatory protein, putative, expressed
LOC_Os01g69150NANA1+40523514..40524047transposon protein, putative, unclassified
LOC_Os01g69160OsAffx.23979.1.S1_at11/111+40527847..40530540regulatory protein, putative
LOC_Os01g69174OsAffx.11798.1.S1_at11/111+40531961..40533731hypothetical protein
LOC_Os01g69174OsAffx.23980.1.S1_at11/111+40531961..40533731hypothetical protein
LOC_Os01g69190Os.53267.1.S1_at11/111+40538046..40540330regulatory protein, putative, expressed
LOC_Os01g69200OsAffx.11799.1.S1_at11/111+40541950..40543266regulatory protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0009658biological_processchloroplast organization and biogenesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009920biological_processcell plate formation (sensu Magnoliophyta)
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0005874cellular_componentmicrotubule
GO:0009504cellular_componentcell plate
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009941cellular_componentchloroplast envelope
GO:0016020cellular_componentmembrane
GO:0003924molecular_functionGTPase activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
GO:0035091molecular_functionphosphoinositide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19079.1.S1_at--1161--7071Chr01:40510139..40510163 (25 bp)
GTCAAGGAAATCTAGCCACTCAGGG
LOC_Os01g69130
Os.19079.1.S1_at--1073--1591Chr01:40510110..40510134 (25 bp)
AGCTGCCATTCAATCCCGATGCAAG
LOC_Os01g69130
Os.19079.1.S1_at--805--2571Chr01:40510081..40510105 (25 bp)
AACGGATTTTGATCTCGCCATTCAC
LOC_Os01g69130
Os.19079.1.S1_at--643--3591Chr01:40509994..40510018 (25 bp)
CATTCAGTTTGTTTGCACCAGATAG
LOC_Os01g69130
Os.19079.1.S1_at--624--10211Chr01:40509944..40509968 (25 bp)
TATTCTTTTCACTCAGTGTTGCGCC
LOC_Os01g69130
Os.19079.1.S1_at--1003--7411Chr01:40509929..40509953 (25 bp)
GTGTTGCGCCCCAATGAAGCCATGA
LOC_Os01g69130
Os.19079.1.S1_at--408--8951Chr01:40509907..40509931 (25 bp)
TGACATGGAGCGAGTTTTGCCCGTT
LOC_Os01g69130
Os.19079.1.S1_at--519--8751Chr01:40509873..40509897 (25 bp)
TGTACAGTATATTTCGCTGCCCAAT
LOC_Os01g69130
Os.19079.1.S1_at--794--4771Chr01:40509858..40509882 (25 bp)
GCTGCCCAATCGTTTCATCATAAAA
LOC_Os01g69130
Os.19079.1.S1_at--964--6091Chr01:40509789..40509813 (25 bp)
GAGTCTATGGTTGCTCGGTGTTAGT
LOC_Os01g69130
Os.19079.1.S1_at--138--3131Chr01:40509758..40509782 (25 bp)
CGTCCGAATGCCTGTATCCTAAAAG
LOC_Os01g69130
Target Sequence 
GTCAAGGAAATCTAGCCACTCAGGGGAGCAGCTGCCATTCAATCCCGATGCAAGCGGTAACGGATTTTGATCTCGCCATT
CACGACNGTCACCCGAACGAACCAGTGGTTGAACCAGGCGATGTACCGTGGTTGCACGCATTCTGCATTCAGTTTGTTTG
CACCAGATAGATGTATGCTTTTCTAGTTCTACTACTATTCTTTTCACTCAGTGTTGCGCCCCAATGAAGCCATGACATGG
AGCGAGTTTTGCCCGTTTGCCCCCTTTGTACAGTATATTTCGCTGCCCAATCGTTTCATCATAAAATGATATATCAGTGA
TGGGTATAGTTTTAGTTTAAGCNCCAGGGAAGAGTCTATGGTTGCTCGGTGTTAGTATCGAGCGTCCGAATGCCTGTATC
CTAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis