Browse Element(s) Details


Os.53267.1.S1_at

Description gb:AK071688.1
DB_XREF= gi:32981711
TID=Os.53267.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023113H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023113H16, full insert sequence.
FL= gb:AK071688.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6919011/11regulatory protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69130Os.19079.1.S1_at11/111+40509609..40517730Dynamin-related protein 3A, putative, expressed
LOC_Os01g69140Os.55111.1.S1_at2/111+40519858..40521570regulatory protein, putative, expressed
LOC_Os01g69150NANA1+40523514..40524047transposon protein, putative, unclassified
LOC_Os01g69160OsAffx.23979.1.S1_at11/111+40527847..40530540regulatory protein, putative
LOC_Os01g69174OsAffx.11798.1.S1_at11/111+40531961..40533731hypothetical protein
LOC_Os01g69174OsAffx.23980.1.S1_at11/111+40531961..40533731hypothetical protein
LOC_Os01g69190Os.53267.1.S1_at11/111+40538046..40540330regulatory protein, putative, expressed
LOC_Os01g69200OsAffx.11799.1.S1_at11/111+40541950..40543266regulatory protein, putative, expressed
LOC_Os01g69210OsAffx.23981.1.S1_at11/111+40547968..40556378Mannosyl oligosaccharide glucosidase family protein, expressed
LOC_Os01g69220Os.50010.1.S1_at11/111+40557066..40560061exostosin family protein, putative, expressed
LOC_Os01g69230Os.8161.1.S1_at11/111+40562037..40565292exocyst subunit EXO70 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53267.1.S1_at--503--1871Chr01:40539769..40539793 (25 bp)
ACGAGCCAGAGCGTGGAGATGCTCC
LOC_Os01g69190
Os.53267.1.S1_at--821--1291Chr01:40539785..40539809 (25 bp)
AGATGCTCCGCTACTGGCAGGCGGC
LOC_Os01g69190
Os.53267.1.S1_at--296--7751Chr01:40539843..40539867 (25 bp)
GGTGTTCGGCCACATCAAGCACGAG
LOC_Os01g69190
Os.53267.1.S1_at--1141--5891Chr01:40539865..40539889 (25 bp)
GAGCTCGTCGCCAAGCTGCGGGCCA
LOC_Os01g69190
Os.53267.1.S1_at--446--9651Chr01:40540079..40540103 (25 bp)
TCAAGTGGACGTACCCCACCCGGTG
LOC_Os01g69190
Os.53267.1.S1_at--187--1791Chr01:40540096..40540120 (25 bp)
ACCCGGTGCCGGAATTCGATTGGAT
LOC_Os01g69190
Os.53267.1.S1_at--518--6611Chr01:40540113..40540137 (25 bp)
GATTGGATGGCGTAAACCTGTTCAT
LOC_Os01g69190
Os.53267.1.S1_at--428--1751Chr01:40540128..40540152 (25 bp)
ACCTGTTCATCCCTAAATTGTCAAG
LOC_Os01g69190
Os.53267.1.S1_at--646--6271Chr01:40540177..40540201 (25 bp)
GATGTCACTGAAATTGCAGCATTCT
LOC_Os01g69190
Os.53267.1.S1_at--1123--5051Chr01:40540192..40540216 (25 bp)
GCAGCATTCTGTTGTTGTATGAACT
LOC_Os01g69190
Os.53267.1.S1_at--435--8731Chr01:40540220..40540244 (25 bp)
TGTCAATCGACAATGAACCTTAATT
LOC_Os01g69190
Target Sequence 
ACGAGCCAGAGCGTGGAGATGCTCCGCTACTGGCAGGCGGCGCGGCCGCGGTTCCCCGGCGCGCACGACCAGGCGGTGTT
CGGCCACATCAAGCACGAGCTCGTCGCCAAGCTGCGGGCCAGGATCGAGCCGCTCGACACGCTCTACTTCGGCGGCTTCT
GCGAGTACCACGACGACCTCGCCCGCGCCGTCACCATGCACGCCGACTGCTGCGTCGGCCTCGACACCAAGGTGCACGAC
CTCACCGACATCGCCGCCGACTGGAAGAACTACACGGGCATGTCGCCGGAGGAGAGGAAGAAGGGGGGTTTCAAGTGGAC
GTACCCCACCCGGTGCCGGAATTCGATTGGATGGCGTAAACCTGTTCATCCCTAAATTGTCAAGAGAATTAATGGTTGAA
GCTAATTTGATGTCACTGAAATTGCAGCATTCTGTTGTTGTATGAACTATATGTCAATCGACAATGAACCTTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis