Browse Element(s) Details


Os.50010.1.S1_at

Description gb:AK119614.1
DB_XREF= gi:37989237
TID=Os.50010.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50010 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-G05, full insert sequence.
FL= gb:AK106015.1 gb:AK119614.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6922011/11exostosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69174OsAffx.11798.1.S1_at11/111+40531961..40533731hypothetical protein
LOC_Os01g69174OsAffx.23980.1.S1_at11/111+40531961..40533731hypothetical protein
LOC_Os01g69190Os.53267.1.S1_at11/111+40538046..40540330regulatory protein, putative, expressed
LOC_Os01g69200OsAffx.11799.1.S1_at11/111+40541950..40543266regulatory protein, putative, expressed
LOC_Os01g69210OsAffx.23981.1.S1_at11/111+40547968..40556378Mannosyl oligosaccharide glucosidase family protein, expressed
LOC_Os01g69220Os.50010.1.S1_at11/111+40557066..40560061exostosin family protein, putative, expressed
LOC_Os01g69230Os.8161.1.S1_at11/111+40562037..40565292exocyst subunit EXO70 family protein, putative, expressed
LOC_Os01g69240Os.54524.1.S1_at11/111+40565538..40567303SNF1-related protein kinase regulatory gamma subunit 1, putative, expressed
LOC_Os01g69250Os.12984.1.S1_at11/111+40567656..40571578Mitochondrial import receptor subunit TOM20, putative, expressed
LOC_Os01g69250OsAffx.23982.1.S1_at9/111+40567656..40571578Mitochondrial import receptor subunit TOM20, putative, expressed
LOC_Os01g69260OsAffx.2441.1.S1_at11/111+40579452..40582265hypothetical protein
LOC_Os01g69270NANA1+40583655..40585321MYND finger family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50010.1.S1_at--592--10111Chr01:40559467..40559491 (25 bp)
TATGAATTCCAGAATCCACCCAGGA
LOC_Os01g69220
Os.50010.1.S1_at--794--2851Chr01:40559534..40559558 (25 bp)
AAGTCCCTGCAGTTAATCTTGCGAT
LOC_Os01g69220
Os.50010.1.S1_at--622--7551Chr01:40559638..40559662 (25 bp)
GGGCGACGGCTGAAGTGACATTTTT
LOC_Os01g69220
Os.50010.1.S1_at--153--6331Chr01:40559675..40559699 (25 bp)
GATGAAGTCATGCTGGTCATTCCTT
LOC_Os01g69220
Os.50010.1.S1_at--636--7131Chr01:40559690..40559714 (25 bp)
GTCATTCCTTGTGCACCATCAAAAT
LOC_Os01g69220
Os.50010.1.S1_at--604--2431Chr01:40559716..40559740 (25 bp)
AAAATGGGTCCGAGTCTCATTCCAC
LOC_Os01g69220
Os.50010.1.S1_at--1029--71Chr01:40559734..40559758 (25 bp)
ATTCCACGCAGGTTTACTGACGCAC
LOC_Os01g69220
Os.50010.1.S1_at--687--8931Chr01:40559751..40559775 (25 bp)
TGACGCACTAACATTTTTGTCCCCT
LOC_Os01g69220
Os.50010.1.S1_at--928--3571Chr01:40559910..40559934 (25 bp)
CATATCGGTCTATCGGATGTTGCAA
LOC_Os01g69220
Os.50010.1.S1_at--490--311Chr01:40559949..40559973 (25 bp)
ATACCACTCCTCTCTGTGATTGATA
LOC_Os01g69220
Os.50010.1.S1_at--315--431Chr01:40560037..40560061 (25 bp)
ATCATTTTGCTGGTTTTCGACTTCT
LOC_Os01g69220
Target Sequence 
TATGAATTCCAGAATCCACCCAGGAAGGGTGATGCTGTGAACATGATATGGAGGCAGGTGAAGCACAAAGTCCCTGCAGT
TAATCTTGCGATTCACAGGAATAGGAGATTAAAAATTCCAGACTGGTGGGGATGAACCTTGGTGAATTGTGTATATATTA
TCATATCGATGGGGCGACGGCTGAAGTGACATTTTTTGGGATGTATATGATGAAGTCATGCTGGTCATTCCTTGTGCACC
ATCAAAATCAAAATGGGTCCGAGTCTCATTCCACGCAGGTTTACTGACGCACTAACATTTTTGTCCCCTTTTTTNGTNCC
TTCTATGACATCCTAACTATTTTTTTCCTCTGATTTTTNCGATATAGTGGAAGCAAATAANTTGNNNTAATNTTGTAGAG
CAGATTTTCATCTNACAATACAAANACACAAAGCACCTATGTTACATATCGGTCTATCGGATGTTGCAATGTATTCCCAT
TAGATACCACTCCTCTCTGTGATTGATACTTTTGTGTACCTTTTAGTTCTAGGAAGTTTCGTTATGTGTAAATATTTCGT
CTCATAGCTTAATCATTTTGCTGGTTTTCGACTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis