Browse Element(s) Details


Os.8161.1.S1_at

Description gb:AK099844.1
DB_XREF= gi:32985053
TID=Os.8161.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8161 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013109B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013109B06, full insert sequence.
FL= gb:AK099844.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6923011/11exocyst subunit EXO70 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69190Os.53267.1.S1_at11/111+40538046..40540330regulatory protein, putative, expressed
LOC_Os01g69200OsAffx.11799.1.S1_at11/111+40541950..40543266regulatory protein, putative, expressed
LOC_Os01g69210OsAffx.23981.1.S1_at11/111+40547968..40556378Mannosyl oligosaccharide glucosidase family protein, expressed
LOC_Os01g69220Os.50010.1.S1_at11/111+40557066..40560061exostosin family protein, putative, expressed
LOC_Os01g69230Os.8161.1.S1_at11/111+40562037..40565292exocyst subunit EXO70 family protein, putative, expressed
LOC_Os01g69240Os.54524.1.S1_at11/111+40565538..40567303SNF1-related protein kinase regulatory gamma subunit 1, putative, expressed
LOC_Os01g69250Os.12984.1.S1_at11/111+40567656..40571578Mitochondrial import receptor subunit TOM20, putative, expressed
LOC_Os01g69250OsAffx.23982.1.S1_at9/111+40567656..40571578Mitochondrial import receptor subunit TOM20, putative, expressed
LOC_Os01g69260OsAffx.2441.1.S1_at11/111+40579452..40582265hypothetical protein
LOC_Os01g69270NANA1+40583655..40585321MYND finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8161.1.S1_at--483--10451Chr01:40564786..40564810 (25 bp)
TTAGTTACAACTCCCTCATGAATTT
LOC_Os01g69230
Os.8161.1.S1_at--54--3531Chr01:40564802..40564826 (25 bp)
CATGAATTTCATTGGTGGCGCTATA
LOC_Os01g69230
Os.8161.1.S1_at--331--7851Chr01:40564829..40564853 (25 bp)
GGTAGCTTGATCTGCAAAGACCTTT
LOC_Os01g69230
Os.8161.1.S1_at--585--5531Chr01:40564873..40564897 (25 bp)
GAAAAATCAGTTTTGCCTGTAGAAG
LOC_Os01g69230
Os.8161.1.S1_at--358--5191Chr01:40564943..40564967 (25 bp)
GCAATCGGAATTGGATACCTAGCTT
LOC_Os01g69230
Os.8161.1.S1_at--243--7951Chr01:40564955..40564979 (25 bp)
GGATACCTAGCTTTTGATCTATCAA
LOC_Os01g69230
Os.8161.1.S1_at--969--7771Chr01:40564980..40565004 (25 bp)
GGTGCTGACTATATCAAGGTTCGAC
LOC_Os01g69230
Os.8161.1.S1_at--130--5631Chr01:40565016..40565040 (25 bp)
GACACTGGACACTACCATGAGCTGT
LOC_Os01g69230
Os.8161.1.S1_at--719--2091Chr01:40565082..40565106 (25 bp)
ACATCTCGTGACTTGTTTGACATCG
LOC_Os01g69230
Os.8161.1.S1_at--474--5291Chr01:40565110..40565134 (25 bp)
GAATGGTTGGTGCTTGGCATTTTTT
LOC_Os01g69230
Os.8161.1.S1_at--964--7331Chr01:40565181..40565205 (25 bp)
GTGCAGTATAGTTTGTTGCTGATAA
LOC_Os01g69230
Target Sequence 
TTAGTTACAACTCCCTCATGAATTTCATTGGTGGCGCTATATTGGTAGCTTGATCTGCAAAGACCTTTGATAATCCGAAG
ATGGNAAAGAAAAATCAGTTTTGCCTGTAGAAGAAGCAGTGTGAACTGCAAGCAAACAGAATTTTTTGGTATTGCGAAGC
AATCGGAATTGGATACCTAGCTTTTGATCTATCAAGGTGCTGACTATATCAAGGTTCGACATGAAATTTAGGACACTGGA
CACTACCATGAGCTGTGTAATTCTTACATTTTTTTTTCTCATCTTTTGTTGATTGTAACATCTCGTGACTTGTTTGACAT
CGAAAGAATGGTTGGTGCTTGGCATTTTTTATGTACNATTCATACCAGTAGTTATATCAATACAGCCANTTGTTATGTGC
AGTATAGTTTGTTGCTGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8161.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis