Browse Element(s) Details


OsAffx.23981.1.S1_at

Description tigr:9629.m06878
TID=OsAffx.23981.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=alpha-glucosidase I
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6921011/11Mannosyl oligosaccharide glucosidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69150NANA1+40523514..40524047transposon protein, putative, unclassified
LOC_Os01g69160OsAffx.23979.1.S1_at11/111+40527847..40530540regulatory protein, putative
LOC_Os01g69174OsAffx.11798.1.S1_at11/111+40531961..40533731hypothetical protein
LOC_Os01g69174OsAffx.23980.1.S1_at11/111+40531961..40533731hypothetical protein
LOC_Os01g69190Os.53267.1.S1_at11/111+40538046..40540330regulatory protein, putative, expressed
LOC_Os01g69200OsAffx.11799.1.S1_at11/111+40541950..40543266regulatory protein, putative, expressed
LOC_Os01g69210OsAffx.23981.1.S1_at11/111+40547968..40556378Mannosyl oligosaccharide glucosidase family protein, expressed
LOC_Os01g69220Os.50010.1.S1_at11/111+40557066..40560061exostosin family protein, putative, expressed
LOC_Os01g69230Os.8161.1.S1_at11/111+40562037..40565292exocyst subunit EXO70 family protein, putative, expressed
LOC_Os01g69240Os.54524.1.S1_at11/111+40565538..40567303SNF1-related protein kinase regulatory gamma subunit 1, putative, expressed
LOC_Os01g69250Os.12984.1.S1_at11/111+40567656..40571578Mitochondrial import receptor subunit TOM20, putative, expressed
LOC_Os01g69250OsAffx.23982.1.S1_at9/111+40567656..40571578Mitochondrial import receptor subunit TOM20, putative, expressed
LOC_Os01g69260OsAffx.2441.1.S1_at11/111+40579452..40582265hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004558molecular_functionalpha-glucosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23981.1.S1_at--366--8131Chr01:40554720..40554744 (25 bp)
GGACTTCGGTCACTTTCTCGAACAA
LOC_Os01g69210
OsAffx.23981.1.S1_at--913--951Chr01:40555193..40555215 (23 bp)
AGGACTACACCACTATGCACATGAG
LOC_Os01g69210
OsAffx.23981.1.S1_at--699--2871Chr01:40555546..40555570 (25 bp)
AAGGGTGCGAGGTCCTTTACTGGAT
LOC_Os01g69210
OsAffx.23981.1.S1_at--653--831Chr01:40555569..40555593 (25 bp)
ATGGACTTCGCTTGTTGTTCTTATC
LOC_Os01g69210
OsAffx.23981.1.S1_at--976--8791Chr01:40555584..40555608 (25 bp)
TGTTCTTATCATGGGCGAGTCCTAC
LOC_Os01g69210
OsAffx.23981.1.S1_at--768--2271Chr01:40556159..40556183 (25 bp)
AAATCTGTCATGGTTCTCGTGGATC
LOC_Os01g69210
OsAffx.23981.1.S1_at--1016--7951Chr01:40556179..40556203 (25 bp)
GGATCAATATTTGCCTGAGCCTTCG
LOC_Os01g69210
OsAffx.23981.1.S1_at--164--4451Chr01:40556197..40556221 (25 bp)
GCCTTCGAGTGAACTTTGCTTGCTA
LOC_Os01g69210
OsAffx.23981.1.S1_at--290--271Chr01:40556233..40556257 (25 bp)
ATATGATCTCACTCTCTAATGCAAG
LOC_Os01g69210
OsAffx.23981.1.S1_at--4--171Chr01:40556272..40556296 (25 bp)
ATTATCGTGATCGTACTGCAGCAGT
LOC_Os01g69210
OsAffx.23981.1.S1_at--670--7051Chr01:40556295..40556319 (25 bp)
GTAACAGCACGATCTTCTGTCATGA
LOC_Os01g69210
Target Sequence 
GGACTTCGGTCACTTTCTCGAACAAGTTCAATATATATGAAGCGCAACACTGAGCATGATCCCCCATATTGGAGAGGTGC
CATTTGGATAAACATGAACTACATGATTCTTTCAGGACTACACCACTATGCACATGAGGATGGTCCATACAAGGACAGGG
CAAAGGAACTGTATGATGAGCTAAGATCAAACCTGATCAGGAACATCGTGAAGAATTACCATGAAACTGGGTTCTTCTGG
GAAAACTATGACCAGAAGAACAAAGGAAAGGGTAAGGGTGCGAGGTCCTTTACTGGATGGACTTCGCTTGTTGTTCTTAT
CATGGGCGAGTCCTACCCGACCCTACATAGAAGAGATGACTACCCAAATCTGTCATGGTTCTCGTGGATCAATATTTGCC
TGAGCCTTCGAGTGAACTTTGCTTGCTACTTCTGCAAGCATATGATCTCACTCTCTAATGCAAGCAAAGTACCGGAAGAT
TATCGTGATCGTACTGCAGCAGTAACAGCACGATCTTCTGTCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis