Browse Element(s) Details


Os.27831.1.S1_at

Description gb:AK067201.1
DB_XREF= gi:32977219
TID=Os.27831.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098F12, full insert sequence.
FL= gb:AK062088.1 gb:AK067201.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6912010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69080Os.11114.1.S1_at11/111+40473633..40477673Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os01g69090Os.50999.1.S1_at10/111+40480075..40484031expressed protein
LOC_Os01g69100Os.4875.1.S1_at11/111+40494589..40497025expressed protein
LOC_Os01g69110Os.50224.1.S1_at11/111+40497771..40500139expressed protein
LOC_Os01g69120Os.27831.1.S1_at10/111+40502554..40509529expressed protein
LOC_Os01g69130Os.19079.1.S1_at11/111+40509609..40517730Dynamin-related protein 3A, putative, expressed
LOC_Os01g69140Os.55111.1.S1_at2/111+40519858..40521570regulatory protein, putative, expressed
LOC_Os01g69150NANA1+40523514..40524047transposon protein, putative, unclassified
LOC_Os01g69160OsAffx.23979.1.S1_at11/111+40527847..40530540regulatory protein, putative
LOC_Os01g69174OsAffx.11798.1.S1_at11/111+40531961..40533731hypothetical protein
LOC_Os01g69174OsAffx.23980.1.S1_at11/111+40531961..40533731hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27831.1.S1_at--559--5051Chr01:40507180..40507204 (25 bp)
GCAGCTGTTCAGGTTGATAGTACAC
LOC_Os01g69120
Os.27831.1.S1_at--1108--7331Chr01:40507220..40507244 (25 bp)
GTGAAACGTGGCCAGAAACTCTTAT
LOC_Os01g69120
Os.27831.1.S1_at--88--9091Chr01:40507556..40507580 (25 bp)
TGCTCATGCTTTTAATTTCTTCCCT
LOC_Os01g69120
Os.27831.1.S1_at--243--10651NONE
TTCCCTGGCACTGATAGCATCGAAG
NONE
Os.27831.1.S1_at--893--2851Chr01:40508121..40508145 (25 bp)
AAGTGCTGGCAATCTTCAAACGAGA
LOC_Os01g69120
Os.27831.1.S1_at--1102--3851Chr01:40508281..40508305 (25 bp)
CTGTGTAATTAACGTGGGTCCTGAA
LOC_Os01g69120
Os.27831.1.S1_at--182--8991Chr01:40508302..40508326 (25 bp)
TGAAGAATTTAACACCCTCCAACCA
LOC_Os01g69120
Os.27831.1.S1_at--574--3471Chr01:40508325..40508349 (25 bp)
CAGGCATCAATTTAATACCCGGAAG
LOC_Os01g69120
Os.27831.1.S1_at--201--5491Chr01:40508366..40508390 (25 bp)
GAACTTGCCCAATTATCTGGTTTAG
LOC_Os01g69120
Os.27831.1.S1_at--1043--10231Chr01:40508391..40508415 (25 bp)
TTTGTCTCAGTATCTGGACCTTCCA
LOC_Os01g69120
Os.27831.1.S1_at--789--2891Chr01:40508444..40508468 (25 bp)
AAGGTCCAAGGTTCATATCTCTAAG
LOC_Os01g69120
Target Sequence 
GCAGCTGTTCAGGTTGATAGTACACCATTGGAAGGAAGTAGTGAAACGTGGCCAGAAACTCTTATATACATTAGCTGCGG
ATGGGACAGTTTTAAGAAGGACTGCAAAAGCTTGATGTCCAGTAAGGCTTGGCATTTGCAGAATGCTCATGCTTTTAATT
TCTTCCCTGGCACTGATAGCATCGAAGTGCTGGCAATCTTCAAACGAGAATCGGAAGCAGTTCAAAAGAAAAAGAAGAAA
GCTAAGAAGAAGAAAGCCAAGTAGACACCCGAAAAGCTAACCTTACAGAAACAATTTTGCTAGATCTGGAAGGCTGGAAG
TGACAAGATCTGGTATACGTTTACCTGTGTAATTAACGTGGGTCCTGAAGAATTTAACACCCTCCAACCAGGCATCAATT
TAATACCCGGAAGATTCATGTAATTCAAAGAACTTGCCCAATTATCTGGTTTAGTTTGTCTCAGTATCTGGACCTTCCAT
TCTGTGCTTCTANAGNATAGAAGAGAAAAGGTCCAAGGTTCATATCTCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis