Browse Element(s) Details


Os.11114.1.S1_at

Description gb:AK103568.1
DB_XREF= gi:32988777
TID=Os.11114.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11114 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132M08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132M08, full insert sequence.
FL= gb:AK103568.1 gb:AK058979.1 gb:AK060087.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6908011/11Acyl-desaturase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69050Os.11338.1.S1_at11/111+40454264..40459522lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
LOC_Os01g69060Os.17227.1.S1_at10/111+40459911..40465200hydrolase, putative, expressed
LOC_Os01g69070Os.17449.1.A1_at11/111+40463075..40469609Auxin Efflux Carrier family protein, expressed
LOC_Os01g69080Os.11114.1.S1_at11/111+40473633..40477673Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os01g69090Os.50999.1.S1_at10/111+40480075..40484031expressed protein
LOC_Os01g69100Os.4875.1.S1_at11/111+40494589..40497025expressed protein
LOC_Os01g69110Os.50224.1.S1_at11/111+40497771..40500139expressed protein
LOC_Os01g69120Os.27831.1.S1_at10/111+40502554..40509529expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0006633biological_processfatty acid biosynthesis
GO:0006952biological_processdefense response
GO:0008610biological_processlipid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0042742biological_processdefense response to bacteria
GO:0004768molecular_functionstearoyl-CoA 9-desaturase activity
GO:0045300molecular_functionacyl-[acyl-carrier protein] desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11114.1.S1_at--876--2091Chr01:40474167..40474191 (25 bp)
ACATCCTTGAGTTCCTCGTTAGCAG
LOC_Os01g69080
Os.11114.1.S1_at--814--8511Chr01:40474141..40474165 (25 bp)
TGGAAGATATCTGACCTGACTGGCC
LOC_Os01g69080
Os.11114.1.S1_at--578--3851Chr01:40474126..40474150 (25 bp)
CTGACTGGCCTATCTAGCGAGGGAA
LOC_Os01g69080
Os.11114.1.S1_at--671--9031Chr01:40474081..40474105 (25 bp)
TGCACCCTTGCTGCTAGGATCAGAA
LOC_Os01g69080
Os.11114.1.S1_at--1085--7011Chr01:40474017..40474041 (25 bp)
GTACATTGCCTTTCAGCTGGGTATA
LOC_Os01g69080
Os.11114.1.S1_at--482--10551Chr01:40473950..40473974 (25 bp)
TTCTTCGAGCTCCAGTGTTACTACT
LOC_Os01g69080
Os.11114.1.S1_at--662--10471Chr01:40473933..40473957 (25 bp)
TTACTACTGTCCGTGCTTGTCGAGA
LOC_Os01g69080
Os.11114.1.S1_at--1067--3171Chr01:40473895..40473919 (25 bp)
CAATACCAGGTGTGTCTTGCTACAT
LOC_Os01g69080
Os.11114.1.S1_at--256--4851Chr01:40473877..40473901 (25 bp)
GCTACATAGTTCTTCAGGTTGACCA
LOC_Os01g69080
Os.11114.1.S1_at--495--10371Chr01:40473762..40473786 (25 bp)
TTTTCATGTACAACTTCTGGCCGTG
LOC_Os01g69080
Os.11114.1.S1_at--418--7451Chr01:40473698..40473722 (25 bp)
GTGTCAATCTGCTCGTGTGTTTAAA
LOC_Os01g69080
Target Sequence 
ACATCCTTGAGTTCCTCGTTAGCAGGTGGAAGATATCTGACCTGACTGGCCTATCTAGCGAGGGAAACAAGGCGCAAGAC
TACCTTTGCACCCTTGCTGCTAGGATCAGAAGGCTGGATGAGAGGGCACAATCGAGAGCCAAGAAAGCTGGTACATTGCC
TTTCAGCTGGGTATATGGTAGGGAAGTTCAACTCTGAGCATCAGACGCCATTGCGACTTCTTCGAGCTCCAGTGTTACTA
CTGTCCGTGCTTGTCGAGACACATTTTGAGAACAATACCAGGTGTGTCTTGCTACATAGTTCTTCAGGTTGACCAAATGA
ACTGAGGGCATATGTTCGTGGTATCTTTGCTTAGAGTGATAGAGAGATTTGCGTCTGTGTTTTAGCTCTTTTTTTCTTTT
CTGCCTTTTCATGTACAACTTCTGGCCGTGTGGATTGGACATGTACTGAACGTGAGTCTGTCGTTGGCCGTGTCAATCTG
CTCGTGTGTTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis