Browse Element(s) Details


Os.17449.1.A1_at

Description gb:AK066552.1
DB_XREF= gi:32976570
TID=Os.17449.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17449 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074K05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074K05, full insert sequence.
FL= gb:AK066552.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6907011/11Auxin Efflux Carrier family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69040Os.27953.2.S1_at11/111+40442758..40447950Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g69040Os.27953.1.S1_x_at11/111+40442758..40447950Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g69050Os.11338.1.S1_at11/111+40454264..40459522lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
LOC_Os01g69060Os.17227.1.S1_at10/111+40459911..40465200hydrolase, putative, expressed
LOC_Os01g69070Os.17449.1.A1_at11/111+40463075..40469609Auxin Efflux Carrier family protein, expressed
LOC_Os01g69080Os.11114.1.S1_at11/111+40473633..40477673Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os01g69090Os.50999.1.S1_at10/111+40480075..40484031expressed protein
LOC_Os01g69100Os.4875.1.S1_at11/111+40494589..40497025expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0009606biological_processtropism
GO:0009630biological_processgravitropism
GO:0009926biological_processauxin polar transport
GO:0010082biological_processregulation of root meristem size
GO:0048364biological_processroot development
GO:0005886cellular_componentplasma membrane
GO:0012506cellular_componentvesicle membrane
GO:0016328cellular_componentlateral plasma membrane
GO:0005215molecular_functiontransporter activity
GO:0009672molecular_functionauxin:hydrogen symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17449.1.A1_at--544--7311Chr01:40467927..40467951 (25 bp)
GTGCTGATCATGTCCAAGTCAGGCA
LOC_Os01g69070
Os.17449.1.A1_at--822--7111Chr01:40467910..40467934 (25 bp)
GTCAGGCACAGGAATGGCCATGTTC
LOC_Os01g69070
Os.17449.1.A1_at--59--4731Chr01:40466713..40466737 (25 bp)
GCTGGTGCTAAAGTTCGCGCTCGGC
LOC_Os01g69070
Os.17449.1.A1_at--575--3091Chr01:40463475..40463499 (25 bp)
AATACGGGCTGCATGCTGATGTGCT
LOC_Os01g69070
Os.17449.1.A1_at--409--6271Chr01:40463351..40463482 (25 bp)
GATGTGCTCAGTACTGCGGTGATTT
LOC_Os01g69070
Os.17449.1.A1_at--616--6531Chr01:40463331..40463355 (25 bp)
GATTTTTGGAATGCTTGTCTCCCTA
LOC_Os01g69070
Os.17449.1.A1_at--580--9951Chr01:40463308..40463332 (25 bp)
TACCCTTGTTAGTCGGATTTTACAT
LOC_Os01g69070
Os.17449.1.A1_at--584--7851Chr01:40463266..40463290 (25 bp)
GGTAGACGCAGAGCCAATGGTACAT
LOC_Os01g69070
Os.17449.1.A1_at--852--9011Chr01:40463184..40463208 (25 bp)
TGCAAAATATCTCCTGCCAACATTC
LOC_Os01g69070
Os.17449.1.A1_at--68--3832Chr01:10314520..10314570 (25 bp)
CTGCCAACATTCCTCATTGCATAAA
NONE
Os.17449.1.A1_at--486--2971Chr01:40463141..40463165 (25 bp)
AATGGGAGTATCGAGTTCTATGGAA
LOC_Os01g69070
Target Sequence 
GTGCTGATCATGTCCAAGTCAGGCACAGGAATGGCCATGTTCAGCATGGGATTGTTCATGGCGCAGNCAGGAGAAGATCA
NTCGCGTGCGGGACGAGCTTTGCGGCGCTGGGGCTGGTGCTAAAGTTCGCGCTCGGCCCCGCCGCCNTGGCCATCGGCTC
CATCGCCGTCGGCCTCCGCGGCGACGTCCTCCGCGTCGCCATCATACAGGCAGCCCTACCTCAATCCATCACATCATTCA
TATTTGCGAAAGAATACGGGCTGCATGCTGATGTGCTCAGTACTGCGGTGATTTTTGGAATGCTTGTCTCCCTACCCTTG
TTAGTCGGATTTTACATAGTTTTAGAGCTAATTAGGTAGACGCAGAGCCAATGGTACATCAGGAAAACATAGTTTTTCCT
TGAGAATTCCAAAACATACATACTGACAACAAATGTTGCAAAATATCTCCTGCCAACATTCCTCATTGCATAAAACTGTA
ATGGGAGTATCGAGTTCTATGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17449.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis