Browse Element(s) Details


Os.27953.1.S1_x_at

Description gb:AK059108.1
DB_XREF= gi:32969126
TID=Os.27953.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27953 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D10, full insert sequence.
FL= gb:AK059108.1 gb:AK105883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6904011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69010OsAffx.19817.2.S1_at11/111+40420562..40423832MATE efflux family protein
LOC_Os01g69010OsAffx.19817.1.S1_x_at7/111+40420562..40423832MATE efflux family protein
LOC_Os01g69020Os.37927.1.S1_at11/111+40424504..40425877transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g69030Os.3454.1.S1_at10/111+40428272..40433444Sucrose-phosphate synthase, putative, expressed
LOC_Os01g69040Os.27953.2.S1_at11/111+40442758..40447950Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g69040Os.27953.1.S1_x_at11/111+40442758..40447950Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g69050Os.11338.1.S1_at11/111+40454264..40459522lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
LOC_Os01g69060Os.17227.1.S1_at10/111+40459911..40465200hydrolase, putative, expressed
LOC_Os01g69070Os.17449.1.A1_at11/111+40463075..40469609Auxin Efflux Carrier family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27953.1.S1_x_at--181--6291Chr01:40445342..40445366 (25 bp)
GATGATTCTGAAACTACCCCTGGAC
LOC_Os01g69040
Os.27953.1.S1_x_at--1085--10171Chr01:40447220..40447244 (25 bp)
TATACTACTATCTCTGACTCTGGGC
LOC_Os01g69040
Os.27953.1.S1_x_at--913--5711Chr01:40447235..40447259 (25 bp)
GACTCTGGGCAGGTATCCTAGGCAT
LOC_Os01g69040
Os.27953.1.S1_x_at--826--8271Chr01:40447255..40447279 (25 bp)
GGCATGGTCATCAGAGATCCTCCAA
LOC_Os01g69040
Os.27953.1.S1_x_at--134--471Chr01:40447439..40447463 (25 bp)
AGGAACCAACTTTCAATTGCCCTGT
LOC_Os01g69040
Os.27953.1.S1_x_at--1022--3151Chr01:40447453..40447477 (25 bp)
AATTGCCCTGTCTGCATGAACGAGC
LOC_Os01g69040
Os.27953.1.S1_x_at--691--8971Chr01:40447469..40447493 (25 bp)
TGAACGAGCTGGTCGAACCGTCATC
LOC_Os01g69040
Os.27953.1.S1_x_at--801--1731Chr01:40447495..40447519 (25 bp)
ACCATCTGCGGTCACATTTTTTGCA
LOC_Os01g69040
Os.27953.1.S1_x_at--1140--5151Chr01:40447517..40447541 (25 bp)
GCAAGCAGTGTATCAAGGCCTCAAT
LOC_Os01g69040
Os.27953.1.S1_x_at--56--1771Chr01:40447564..40447588 (25 bp)
ACCTGCCGGAGGAAGCTGACCATGA
LOC_Os01g69040
Os.27953.1.S1_x_at--493--8951Chr01:40447717..40447741 (25 bp)
TGACAGGCTTGCTAGCATACCGTTT
LOC_Os01g69040
Target Sequence 
GATGATTCTGAAACTACCCCTGGACAAGCAGGGGATGCAGTTGATGAGCATGTGGATATACTACTATCTCTGACTCTGGG
CAGGTATCCTAGGCATGGTCATCAGAGATCCTCCAACATCAGCACCAGCCCTGTGATACATATAATTGACACACCTAGCA
ATGCACTCCCTGAACCCGAGAAGGCCGTTCCGAAGGAACCAACTTTCAATTGCCCTGTCTGCATGAACGAGCTGGTCGAA
CCGTCATCGACCATCTGCGGTCACATTTTTTGCAAGCAGTGTATCAAGGCCTCAATCCAGGCTCAGAAGAAGTGCCCTAC
CTGCCGGAGGAAGCTGACCATGAACAACTTCCACCGCGTGTATCTCCCTTCTGCGGAGTAAGCCGGTTTCCACCATTCTG
GAAATCAGCGTCCCTCCTCCCACCCTGACTCTCGCCACATTGGCGTTCTGATGATTGTATCTGAAAATGTTTGACAGGCT
TGCTAGCATACCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27953.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis