Browse Element(s) Details


OsAffx.19817.1.S1_x_at

Description tigr:9633.m03133
TID=OsAffx.19817.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3391010/11MATE efflux family protein, putative
LOC_Os12g0605010/11MATE efflux family protein, putative
LOC_Os01g690107/11MATE efflux family protein
LOC_Os12g251601/11MATE efflux family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33860NANA5+19894208..19895259hypothetical protein
LOC_Os05g33870OsAffx.4510.1.S1_at11/115+19898356..19899306Ran GTPase activating protein, putative
LOC_Os05g33880Os.11188.1.S1_at10/115+19900616..19904541Cystatin domain containing protein, expressed
LOC_Os05g33890Os.32863.1.S1_at11/115+19905608..19910939Microtubule associated protein containing protein, expressed
LOC_Os05g33890Os.25587.2.S1_at3/115+19905608..19910939Microtubule associated protein containing protein, expressed
LOC_Os05g33900OsAffx.4511.1.S1_s_at11/115+19914384..19916416nodulin, putative, expressed
LOC_Os05g33900OsAffx.4511.1.S1_at11/115+19914384..19916416nodulin, putative, expressed
LOC_Os05g33910OsAffx.19817.1.S1_x_at10/115+19919542..19920089MATE efflux family protein, putative
LOC_Os05g33920OsAffx.14950.1.S1_at11/115+19944949..19946203pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006879biological_processiron ion homeostasis
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19817.1.S1_x_at--1030--9192Chr12:2808894..2808918 (25 bp)
TGCCAGCGTGTTTGCAAAGAAGGAT
LOC_Os12g06050
OsAffx.19817.1.S1_x_at--9--9453Chr01:40423082..40423106 (25 bp)
TCGGCGTTGGGCTGACGGCCTTCCT
LOC_Os01g69010
OsAffx.19817.1.S1_x_at--1091--1492Chr12:2808770..2808794 (25 bp)
AGCGGCGTTTTCACCAGCGACACCG
LOC_Os12g06050
OsAffx.19817.1.S1_x_at--582--1512Chr12:2808738..2808761 (24 bp)
AGCACCATTCACAAAGGCGTTCCGT
LOC_Os12g06050
OsAffx.19817.1.S1_x_at--409--5071NONE
GCACCATTCACAAAGGCGTTCCGTT
NONE
OsAffx.19817.1.S1_x_at--960--5013Chr01:40423298..40423322 (25 bp)
GCAGACGATAAACACGCTGGCCTTC
LOC_Os01g69010
OsAffx.19817.1.S1_x_at--854--1393Chr01:40423300..40423324 (25 bp)
AGACGATAAACACGCTGGCCTTCGT
LOC_Os01g69010
OsAffx.19817.1.S1_x_at--387--1893Chr01:40423302..40423326 (25 bp)
ACGATAAACACGCTGGCCTTCGTCT
LOC_Os01g69010
OsAffx.19817.1.S1_x_at--1118--6453Chr01:40423304..40423328 (25 bp)
GATAAACACGCTGGCCTTCGTCTTC
LOC_Os01g69010
OsAffx.19817.1.S1_x_at--375--2413Chr01:40423307..40423331 (25 bp)
AAACACGCTGGCCTTCGTCTTCGAC
LOC_Os01g69010
OsAffx.19817.1.S1_x_at--282--8454Chr01:40423315..40423335 (21 bp)
TGGCCTTCGTCTTCGACGGCGAATG
LOC_Os01g69010
Target Sequence 
TGCCAGCGTGTTTGCAAAGAAGGATCACTACAAGNTGGCGGTGACCACCGCCCGCNTGCTGCAGCTCNCCGTCGTCCTCG
GCGTTGGGCTGACGGCCTTCCTCGCCNCCGGCATGTGGTTCGGNAGCGGCGTTTTCACCAGCGACACCGCCGTCATCAGC
ACCATTCACAAAGGCGTTCCGTTNGTCGCTGGCANGCAGACGATAAACACGCTGGCCTTCGTCTTCGACGGCGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19817.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis