Browse Element(s) Details


Os.17227.1.S1_at

Description gb:AK059028.1
DB_XREF= gi:32969046
TID=Os.17227.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17227 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-B12, full insert sequence.
FL= gb:AK059028.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6906010/11hydrolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69040Os.27953.2.S1_at11/111+40442758..40447950Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g69040Os.27953.1.S1_x_at11/111+40442758..40447950Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g69050Os.11338.1.S1_at11/111+40454264..40459522lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
LOC_Os01g69060Os.17227.1.S1_at10/111+40459911..40465200hydrolase, putative, expressed
LOC_Os01g69070Os.17449.1.A1_at11/111+40463075..40469609Auxin Efflux Carrier family protein, expressed
LOC_Os01g69080Os.11114.1.S1_at11/111+40473633..40477673Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os01g69090Os.50999.1.S1_at10/111+40480075..40484031expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17227.1.S1_at--287--9211Chr01:40464477..40464501 (25 bp)
TGCCAAGAACAGATCCTCCACATAG
LOC_Os01g69060
Os.17227.1.S1_at--1098--5511Chr01:40464651..40464675 (25 bp)
GAAAACAGAAGCTGAACCGCCCCAT
LOC_Os01g69060
Os.17227.1.S1_at--504--10211Chr01:40464688..40464712 (25 bp)
TATTCCATGGATAAGACACTGCCCT
LOC_Os01g69060
Os.17227.1.S1_at--705--9971Chr01:40464748..40464772 (25 bp)
TACCAGTTCGTGTTACATGTTCACT
LOC_Os01g69060
Os.17227.1.S1_at--1122--171Chr01:40464821..40464845 (25 bp)
ATTTTTCGTCATGGTCTGATTGCTT
LOC_Os01g69060
Os.17227.1.S1_at--103--3891Chr01:40464911..40464935 (25 bp)
CTGTCGTTTGGAATGCGCACTTGCA
LOC_Os01g69060
Os.17227.1.S1_at--37--331Chr01:40465010..40465034 (25 bp)
ATACGGTTCATGTTTGTGGCTCTGC
LOC_Os01g69060
Os.17227.1.S1_at--469--4811Chr01:40465028..40465052 (25 bp)
GCTCTGCGAGCAACATTAACCTTAA
LOC_Os01g69060
Os.17227.1.S1_at--75--2931Chr01:40465052..40465076 (25 bp)
AAGGCTTAAAGCACCCAGTGGTCAA
LOC_Os01g69060
Os.17227.1.S1_at--150--7791Chr01:40465086..40465111 (25 bp)
GGTGCTGAGCCGTGCTGACAACTAA
LOC_Os01g69060
Os.17227.1.S1_at--1124--7391NONE
GTGTAGTTTTCACCATGGATTCTCT
NONE
Target Sequence 
TGCCAAGAACAGATCCTCCACATAGGGGTCAAAATGTGCCGGTGCAATAGGGACATGCACTATTCTTTGCATGAAAACAG
AAGCTGAACCGCCCCATTGAAGACCNATCTATTCCATGGATAAGACACTGCCCTAAAGTGATGGTGAGTGTTTCTCAGAC
AATAATGGNATACCAGTTCGTGTTACATGTTCACTGATAGGGTAAGAGGTTCAAGCCTGGTATATATATAGTGCTGGGCC
GAAATTTTTCGTCATGGTCTGATTGCTTAAAAGCAAGNTCAAGGTGACCAAGATTCCAAGAAGATTATATTAGTACTGAT
CAGGAATTCAGTTCTGTCGTTTGGAATGCGCACTTGCACACCGACTACGCAACATATAATTAATCTGNTACTGCGCCTTT
CGTGTGCANNNNNNNNNNNNCTTTTGTCACAATACGGTTCATGTTTGTGGCTCTGCGAGCAACATTAACCTTAAAGGCTT
AAAGCACCCAGTGGTCAAGATTAGTGTGGTGCTGAGCCGTGCTGACAACTAAGCTCAAATCTCACGTAGGAATAGCAGTG
GAATGTGTAGTTTTCACCATGGATTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis