Browse Element(s) Details


OsAffx.19817.2.S1_at

Description tigr:9629.m06858
TID=OsAffx.19817.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MATE efflux family protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6901011/11MATE efflux family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68960OsAffx.23978.1.S1_at11/111+40394670..40396454hypothetical protein
LOC_Os01g68970Os.10258.1.S1_at11/111+40397622..40400613CPR5 protein, putative, expressed
LOC_Os01g68980OsAffx.13846.2.S1_s_at11/111+40401081..40401700hypothetical protein
LOC_Os01g68980OsAffx.13846.1.S1_at4/111+40401081..40401700hypothetical protein
LOC_Os01g68990Os.52238.1.S1_at3/111+40404837..40409259retrotransposon, putative, centromere-specific
LOC_Os01g69000NANA1+40411243..40412598retrotransposon, putative, centromere-specific
LOC_Os01g69010OsAffx.19817.2.S1_at11/111+40420562..40423832MATE efflux family protein
LOC_Os01g69010OsAffx.19817.1.S1_x_at7/111+40420562..40423832MATE efflux family protein
LOC_Os01g69020Os.37927.1.S1_at11/111+40424504..40425877transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g69030Os.3454.1.S1_at10/111+40428272..40433444Sucrose-phosphate synthase, putative, expressed
LOC_Os01g69040Os.27953.2.S1_at11/111+40442758..40447950Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g69040Os.27953.1.S1_x_at11/111+40442758..40447950Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006879biological_processiron ion homeostasis
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19817.2.S1_at--51--951Chr01:40422369..40422393 (25 bp)
AGGAAGGTCGATGTCATCCCGTCCA
LOC_Os01g69010
OsAffx.19817.2.S1_at--464--9311Chr01:40422385..40422409 (25 bp)
TCCCGTCCAGTCTAAAATCACTCAA
LOC_Os01g69010
OsAffx.19817.2.S1_at--657--3071Chr01:40422400..40422424 (25 bp)
AATCACTCAAGTTTCGTCGTTTCCT
LOC_Os01g69010
OsAffx.19817.2.S1_at--401--10611Chr01:40422412..40422433 (22 bp)
TTCGTCGTTTCCTCGGATGCGGGTT
LOC_Os01g69010
OsAffx.19817.2.S1_at--334--7551Chr01:40422762..40422786 (25 bp)
GTGGCCGTAACGTTCTGCGTGACGC
LOC_Os01g69010
OsAffx.19817.2.S1_at--521--571Chr01:40423168..40423335 (25 bp)
ATCCACAGAGGCGTTCCGGTCGGCG
LOC_Os01g69010
OsAffx.19817.2.S1_at--383--8911Chr01:40423510..40423534 (25 bp)
TGACGATCCCGTGCTTGGTTCTTCT
LOC_Os01g69010
OsAffx.19817.2.S1_at--607--10851Chr01:40423524..40423548 (25 bp)
TTGGTTCTTCTCTCGTCGCACGGCG
LOC_Os01g69010
OsAffx.19817.2.S1_at--986--7191Chr01:40423554..40423578 (25 bp)
GTCGGGATCTGGATCGCCTTGGCCA
LOC_Os01g69010
OsAffx.19817.2.S1_at--466--3611Chr01:40423571..40423595 (25 bp)
CTTGGCCATCTACATGAGCGTCAGA
LOC_Os01g69010
OsAffx.19817.2.S1_at--221--5931Chr01:40423594..40423616 (23 bp)
GAGCATTTGCTAGCACCTGGAGGAT
LOC_Os01g69010
Target Sequence 
AGGAAGGTCGATGTCATCCCGTCCAGTCTAAAATCACTCAAGTTTCGTCGTTTCCTCGGATGCGGGTTTCTGCTGCTGGC
GAGGGTGGTGGCCGTAACGTTCTGCGTGACGCTGGCGGCGTCGCTCGCGGCGCGCCACGGCGCGACAGCCATGGCGGCGT
TCCAGATCTGCGCCCAAGTCTGGCTCGCCTCATCGCTCCTCGCCGACGGCCTCGCTGTCGCCGGCCAGGCCTTGCTTGCC
AGCGCGTTTGCAAAGAAGGATCACTACAAGGTGGCGGTGACCACCGCCCGCGTGCTGCAGCTCGCCGTTGTCCTCGGCGT
TGGGCTGACGGCCTTCCTCGCCGCCGGCATGTGGTTCGGCGCCGGCGTTTTCACCAGCGACGCCGCCGTCATCAGCACCA
TCCACAGAGGCGTTCCGGTCGGCGTAGCGGCGGTGACGATCCCGTGCTTGGTTCTTCTCTCGTCGCACGGCGGGTTCGTC
GGGATCTGGATCGCCTTGGCCATCTACATGAGCGTCAGAGCATTTGCTAGCACCTGGAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19817.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis