Browse Element(s) Details


OsAffx.23978.1.S1_at

Description tigr:9629.m06853
TID=OsAffx.23978.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6896011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68920NANA1+40369722..40371101retrotransposon protein, putative, unclassified
LOC_Os01g68930Os.55775.1.S1_at11/111+40382923..40386295expressed protein
LOC_Os01g68940Os.32732.1.S1_at11/111+40388472..40390482Ubiquitin-like protein SMT3, putative, expressed
LOC_Os01g68950Os.34904.1.S1_at11/111+40390922..40393250Ubiquitin-like protein SMT3, putative, expressed
LOC_Os01g68950Os.12426.1.S1_s_at11/111+40390922..40393250Ubiquitin-like protein SMT3, putative, expressed
LOC_Os01g68960OsAffx.23978.1.S1_at11/111+40394670..40396454hypothetical protein
LOC_Os01g68970Os.10258.1.S1_at11/111+40397622..40400613CPR5 protein, putative, expressed
LOC_Os01g68980OsAffx.13846.2.S1_s_at11/111+40401081..40401700hypothetical protein
LOC_Os01g68980OsAffx.13846.1.S1_at4/111+40401081..40401700hypothetical protein
LOC_Os01g68990Os.52238.1.S1_at3/111+40404837..40409259retrotransposon, putative, centromere-specific
LOC_Os01g69000NANA1+40411243..40412598retrotransposon, putative, centromere-specific
LOC_Os01g69010OsAffx.19817.2.S1_at11/111+40420562..40423832MATE efflux family protein
LOC_Os01g69010OsAffx.19817.1.S1_x_at7/111+40420562..40423832MATE efflux family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23978.1.S1_at--368--9731Chr01:40395842..40395866 (25 bp)
TCAATGTTTGCCCAAAGCGGAAATT
LOC_Os01g68960
OsAffx.23978.1.S1_at--865--10331Chr01:40395931..40395955 (25 bp)
TTTACAACCGAGGTCTGCCCAAAGC
LOC_Os01g68960
OsAffx.23978.1.S1_at--10--3991Chr01:40395963..40395987 (25 bp)
CGGGTTGGCTTCAGATTGTACAACA
LOC_Os01g68960
OsAffx.23978.1.S1_at--429--7671Chr01:40396060..40396084 (25 bp)
GGGTTGTATGCTGGAAAAAGTCTTA
LOC_Os01g68960
OsAffx.23978.1.S1_at--260--10451Chr01:40396139..40396163 (25 bp)
TTAGCGATGAAATCACCCTTGGTTT
LOC_Os01g68960
OsAffx.23978.1.S1_at--844--371Chr01:40396150..40396174 (25 bp)
ATCACCCTTGGTTTGAAGAGAAGAC
LOC_Os01g68960
OsAffx.23978.1.S1_at--552--6311Chr01:40396183..40396207 (25 bp)
GATGACGCCAATCCAGCTAAGAAGA
LOC_Os01g68960
OsAffx.23978.1.S1_at--545--5271Chr01:40396219..40396359 (25 bp)
GAATGCAACACAGAAACACAGCAGC
LOC_Os01g68960
OsAffx.23978.1.S1_at--907--1671Chr01:40396357..40396381 (25 bp)
AGCCGGTTAAGTTCTCCTGCAGCTT
LOC_Os01g68960
OsAffx.23978.1.S1_at--78--9051Chr01:40396374..40396398 (25 bp)
TGCAGCTTCATCAACGGGCACGGAA
LOC_Os01g68960
OsAffx.23978.1.S1_at--203--9711Chr01:40396384..40396408 (25 bp)
TCAACGGGCACGGAAAGCGGTCACG
LOC_Os01g68960
Target Sequence 
TCAATGTTTGCCCAAAGCGGAAATTTGGGTTGGTTTCAGATTGTACAACCGAGATCTGTCCAAAGCGAAAATTTGGGTTG
GTTTCAGATTTTACAACCGAGGTCTGCCCAAAGCGAAAATTCGGGTTGGCTTCAGATTGTACAACAGAGGTCTGCCCAAA
GAGAAAATTTGGGTTGGTTTCAGATTGTACAACCGAGGTCTGCCCAAAGCGAAAATTTGGGTTGTATGCTGGAAAAAGTC
TTAAGAAGAGCAAGAATTCCGAAGATGGAGTTCTGTCTAGAACTGGGGCTGATATACTTAGCGATGAAATCACCCTTGGT
TTGAAGAGAAGACTAAAATTGGATGACGCCAATCCAGCTAAGAAGATGAAGCAAATAGAATGCAACACAGAAACACAGCA
GCCGGTTAAGTTCTCCTGCAGCTTCATCAACGGGCACGGAAAGCGGTCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis