Browse Element(s) Details


Os.55775.1.S1_at

Description gb:AK108783.1
DB_XREF= gi:32993992
TID=Os.55775.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55775 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-A08, full insert sequence.
FL= gb:AK108783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6893011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68890OsAffx.23977.1.S1_x_at11/111+40356970..40358278P21-Rho-binding domain containing protein, expressed
LOC_Os01g68900Os.6609.1.S1_at11/111+40362890..40364322Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g68900OsAffx.12779.1.A1_x_at1/111+40362890..40364322Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g68920NANA1+40369722..40371101retrotransposon protein, putative, unclassified
LOC_Os01g68930Os.55775.1.S1_at11/111+40382923..40386295expressed protein
LOC_Os01g68940Os.32732.1.S1_at11/111+40388472..40390482Ubiquitin-like protein SMT3, putative, expressed
LOC_Os01g68950Os.34904.1.S1_at11/111+40390922..40393250Ubiquitin-like protein SMT3, putative, expressed
LOC_Os01g68950Os.12426.1.S1_s_at11/111+40390922..40393250Ubiquitin-like protein SMT3, putative, expressed
LOC_Os01g68960OsAffx.23978.1.S1_at11/111+40394670..40396454hypothetical protein
LOC_Os01g68970Os.10258.1.S1_at11/111+40397622..40400613CPR5 protein, putative, expressed
LOC_Os01g68980OsAffx.13846.2.S1_s_at11/111+40401081..40401700hypothetical protein
LOC_Os01g68980OsAffx.13846.1.S1_at4/111+40401081..40401700hypothetical protein
LOC_Os01g68990Os.52238.1.S1_at3/111+40404837..40409259retrotransposon, putative, centromere-specific
LOC_Os01g69000NANA1+40411243..40412598retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55775.1.S1_at--1022--7791Chr01:40383248..40383272 (25 bp)
GGTTAATTAGGTCAATGGTATGCAT
LOC_Os01g68930
Os.55775.1.S1_at--549--10091Chr01:40383222..40383246 (25 bp)
TATGGTGCCAATATGGTCCTTGTAC
LOC_Os01g68930
Os.55775.1.S1_at--354--7271Chr01:40383207..40383231 (25 bp)
GTCCTTGTACCATGCATTTCTGATA
LOC_Os01g68930
Os.55775.1.S1_at--289--3591Chr01:40383193..40383217 (25 bp)
CATTTCTGATATATTGGGTTGTGTC
LOC_Os01g68930
Os.55775.1.S1_at--448--7911Chr01:40383177..40383201 (25 bp)
GGTTGTGTCAATGTTTTGTGGCCAA
LOC_Os01g68930
Os.55775.1.S1_at--348--2291Chr01:40383150..40383174 (25 bp)
AAATGCATGCCCTTGTTGGAATATT
LOC_Os01g68930
Os.55775.1.S1_at--871--6611Chr01:40383136..40383160 (25 bp)
GTTGGAATATTGTTAGCCATTTTTT
LOC_Os01g68930
Os.55775.1.S1_at--806--10491Chr01:40383110..40383134 (25 bp)
TTCACTTTATTTCTTCCATTGTCCC
LOC_Os01g68930
Os.55775.1.S1_at--1131--10111Chr01:40383082..40383106 (25 bp)
TTCGGAACTTCTTTGCCTGTACTTG
LOC_Os01g68930
Os.55775.1.S1_at--903--4471Chr01:40383068..40383092 (25 bp)
GCCTGTACTTGCTTGGTTAGTGTGA
LOC_Os01g68930
Os.55775.1.S1_at--310--8671Chr01:40382933..40382957 (25 bp)
TGTGGACATATTGGTTTGGTGAGAT
LOC_Os01g68930
Target Sequence 
GGTTAATTAGGTCAATGGTATGCATATATGGTGCCAATATGGTCCTTGTACCATGCATTTCTGATATATTGGGTTGTGTC
AATGTTTTGTGGCCAAGGAAATGCATGCCCTTGTTGGAATATTGTTAGCCATTTTTTTTTCACTTTATTTCTTCCATTGT
CCCCCCTTCGGAACTTCTTTGCCTGTACTTGCTTGGTTAGTGTGAGATAGTATGATAATAGAGTGTNGTAGGCAGGGNNN
TGGCAGTNGCAAAGTGTGCNNGCTTTTTTNNGGTNCTTGGTTGAAGGGGGAAAGTTGATGTAATCAGATAAGTCAGTAAT
TGTGGACATATTGGTTTGGTGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis