Browse Element(s) Details


Os.6609.1.S1_at

Description gb:AK109460.1
DB_XREF= gi:32994669
TID=Os.6609.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6609 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0413C03.23 (P0413C03.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-C08, full insert sequence.
FL= gb:AK109460.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6890011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68870Os.23868.1.S1_at11/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68870Os.56430.1.S1_x_at1/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68870OsAffx.11967.1.S1_x_at1/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68880NANA1+40355323..40355577hypothetical protein
LOC_Os01g68890OsAffx.23977.1.S1_x_at11/111+40356970..40358278P21-Rho-binding domain containing protein, expressed
LOC_Os01g68900Os.6609.1.S1_at11/111+40362890..40364322Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g68900OsAffx.12779.1.A1_x_at1/111+40362890..40364322Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g68920NANA1+40369722..40371101retrotransposon protein, putative, unclassified
LOC_Os01g68930Os.55775.1.S1_at11/111+40382923..40386295expressed protein
LOC_Os01g68940Os.32732.1.S1_at11/111+40388472..40390482Ubiquitin-like protein SMT3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0005516molecular_functioncalmodulin binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6609.1.S1_at--1142--5891Chr01:40363265..40363289 (25 bp)
GAGCTCTGGGTCAGCCGCGGCAACT
LOC_Os01g68900
Os.6609.1.S1_at--270--9511Chr01:40363236..40363260 (25 bp)
TCTCTGCAACGGTTTCATCCAAGAA
LOC_Os01g68900
Os.6609.1.S1_at--857--571Chr01:40363220..40363244 (25 bp)
ATCCAAGAAATCCTCGACATCTTCT
LOC_Os01g68900
Os.6609.1.S1_at--1040--9011Chr01:40363172..40363196 (25 bp)
TGCAAACCAAGAAATCCTCGACATC
LOC_Os01g68900
Os.6609.1.S1_at--657--391Chr01:40363110..40363134 (25 bp)
ATCATGCAGCATGGCGGTAGTAGCT
LOC_Os01g68900
Os.6609.1.S1_at--689--6991Chr01:40363054..40363078 (25 bp)
GTACGAGTGGCCAATTCATGCGCCG
LOC_Os01g68900
Os.6609.1.S1_at--10--4531Chr01:40363033..40363057 (25 bp)
GCCGCTCCGCTGAAAATTAACCTGA
LOC_Os01g68900
Os.6609.1.S1_at--968--6391Chr01:40362976..40363000 (25 bp)
GATCGATTGATTTGTGTGCAAGTGC
LOC_Os01g68900
Os.6609.1.S1_at--1145--5171Chr01:40362959..40362983 (25 bp)
GCAAGTGCAACATGAAACGCTGAAA
LOC_Os01g68900
Os.6609.1.S1_at--1154--2051Chr01:40362932..40362956 (25 bp)
ACTTGTAATTTATTGGCGTTGCTGA
LOC_Os01g68900
Os.6609.1.S1_at--726--10091Chr01:40362892..40362916 (25 bp)
TAGGCGGCACTGTCTCATTGATGAA
LOC_Os01g68900
Target Sequence 
GAGCTCTGGGTCAGCCGCGGCAACTGCCCTCTCTGCAACGGTTTCATCCAAGAAATCCTCGACATCTTCTAATCATCTTC
TTCAGAATTCAGATGCAAACCAAGAAATCCTCGACATCTTCTAATCTTCTTCAGAATTCAGATGCAGATAGAACGATCAT
GCAGCATGGCGGTAGTAGCTATAAGATTTGTTGGTTGGATTGGTTGATGGCGTACGAGTGGCCAATTCATGCGCCGCTCC
GCTGAAAATTAACCTGAAAAAAAAATTGAAACTTATAGGGGATTCGATCGATCGATTGATTTGTGTGCAAGTGCAACATG
AAACGCTGAAAACACTTGTAATTTATTGGCGTTGCTGAAAGATAAATAATTAATAGGCGGCACTGTCTCATTGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis