Browse Element(s) Details


Os.23868.1.S1_at

Description gb:AB103395.1
DB_XREF= gi:33383177
GEN=MSP1
TID=Os.23868.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23868 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) MSP1 mRNA for putative leucin-rich repeat protein kinase, complete cds.
PROD=putative leucin-rich repeat protein kinase
FL= gb:AB103395.1 gb:AK120933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6887011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68830Os.42759.1.S1_at11/111+40319029..40321959expressed protein
LOC_Os01g68830Os.4958.1.A1_at10/111+40319029..40321959expressed protein
LOC_Os01g68840OsAffx.21847.1.S1_s_at11/111+40324972..40325940expressed protein
LOC_Os01g68850OsAffx.9656.3.S1_x_at11/111+40326245..40327940hypothetical protein
LOC_Os01g68850OsAffx.9656.1.S1_x_at2/111+40326245..40327940hypothetical protein
LOC_Os01g68850Os.57362.1.S1_at1/111+40326245..40327940hypothetical protein
LOC_Os01g68860Os.19086.1.S1_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.1.S1_a_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.2.S1_x_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.3.S1_x_at7/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68870Os.23868.1.S1_at11/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68870Os.56430.1.S1_x_at1/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68870OsAffx.11967.1.S1_x_at1/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68880NANA1+40355323..40355577hypothetical protein
LOC_Os01g68890OsAffx.23977.1.S1_x_at11/111+40356970..40358278P21-Rho-binding domain containing protein, expressed
LOC_Os01g68900Os.6609.1.S1_at11/111+40362890..40364322Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g68900OsAffx.12779.1.A1_x_at1/111+40362890..40364322Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g68920NANA1+40369722..40371101retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556biological_processmicrosporogenesis
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0010234biological_processtapetal cell fate specification
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23868.1.S1_at--629--8731Chr01:40350209..40350233 (25 bp)
TGATCGCCCGCGGTAAGCAGAACGA
LOC_Os01g68870
Os.23868.1.S1_at--155--10631Chr01:40350238..40350262 (25 bp)
TTCGATCCATGCTTGCCGGTTTCAA
LOC_Os01g68870
Os.23868.1.S1_at--109--1931Chr01:40350377..40350401 (25 bp)
ACGGCATGGAATGTGGACCTCTGGT
LOC_Os01g68870
Os.23868.1.S1_at--326--7691Chr01:40350402..40350426 (25 bp)
GGTGACCGTCTCCAGGGACATGTAA
LOC_Os01g68870
Os.23868.1.S1_at--795--8131Chr01:40350417..40350441 (25 bp)
GGACATGTAATGCTCTCTGCTTGAT
LOC_Os01g68870
Os.23868.1.S1_at--904--3771Chr01:40350431..40350455 (25 bp)
CTCTGCTTGATCTTCCTGAAACTAA
LOC_Os01g68870
Os.23868.1.S1_at--732--7051Chr01:40350521..40350545 (25 bp)
GTAACCGAGCTATCTGGAGGCTGTA
LOC_Os01g68870
Os.23868.1.S1_at--659--3711Chr01:40350556..40350580 (25 bp)
CTAGAGTTACTCATGTTCAGGCTGT
LOC_Os01g68870
Os.23868.1.S1_at--676--7011Chr01:40350612..40350636 (25 bp)
GTACTATTGTCACTGGTGGTTCCTG
LOC_Os01g68870
Os.23868.1.S1_at--308--1131Chr01:40350647..40350671 (25 bp)
AGTGCTTAATGTGCTGTCGTTTGAA
LOC_Os01g68870
Os.23868.1.S1_at--292--2331Chr01:40350674..40350698 (25 bp)
AAAGTACTGCTTGCCTGTTTCTAAG
LOC_Os01g68870
Target Sequence 
TGATCGCCCGCGGTAAGCAGAACGAGCTGTTCGATCCATGCTTGCCGGTTTCAAGCGTGTGGCGGGAGCAGATGGCGCGC
GTGCTCGCCATCGCCCGGGACTGCACCGCCGACGAGCCGTTCAAGAGGCCGACAATGCTGGAGGTGGTGAAGGGGCTCAA
GATGACCCACGGCATGGAATGTGGACCTCTGGTGGTGACCGTCTCCAGGGACATGTAATGCTCTCTGCTTGATCTTCCTG
AAACTAATGTAGTAATAATGTAGTCAGTAGGGAGTAGGCTAATGGTAGTTAGGAGTAACTCGTAGCTATAGAGTAACCGA
GCTATCTGGAGGCTGTAATGAGGGAAACTAGAGTTACTCATGTTCAGGCTGTAGTTGGAACTAGTATTAAGACCTTTTAT
CTTGTACTATTGTCACTGGTGGTTCCTGTGGCAATGTGAGTGCTTAATGTGCTGTCGTTTGAATAAAAGTACTGCTTGCC
TGTTTCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis