Browse Element(s) Details


Os.42759.1.S1_at

Description gb:NM_189949.1
DB_XREF= gi:34906981
GEN=P0413C03.14
TID=Os.42759.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42759 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0413C03.14 (P0413C03.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0413C03.14 (P0413C03.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6883011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68810Os.26433.1.S1_at10/111+40287152..40302766expressed protein
LOC_Os01g68820Os.31501.1.S1_s_at11/111+40312072..40313344expressed protein
LOC_Os01g68830Os.42759.1.S1_at11/111+40319029..40321959expressed protein
LOC_Os01g68830Os.4958.1.A1_at10/111+40319029..40321959expressed protein
LOC_Os01g68840OsAffx.21847.1.S1_s_at11/111+40324972..40325940expressed protein
LOC_Os01g68850OsAffx.9656.3.S1_x_at11/111+40326245..40327940hypothetical protein
LOC_Os01g68850OsAffx.9656.1.S1_x_at2/111+40326245..40327940hypothetical protein
LOC_Os01g68850Os.57362.1.S1_at1/111+40326245..40327940hypothetical protein
LOC_Os01g68860Os.19086.1.S1_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.1.S1_a_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.2.S1_x_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.3.S1_x_at7/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68870Os.23868.1.S1_at11/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68870Os.56430.1.S1_x_at1/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68870OsAffx.11967.1.S1_x_at1/111+40343452..40350702Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42759.1.S1_at--142--9971Chr01:40320990..40321014 (25 bp)
TACCGCTGCCCCTGAAGCAAATGCT
LOC_Os01g68830
Os.42759.1.S1_at--1159--5491Chr01:40321024..40321048 (25 bp)
GAACAACGCAGATACGTCCAAGCCT
LOC_Os01g68830
Os.42759.1.S1_at--684--7271Chr01:40321039..40321063 (25 bp)
GTCCAAGCCTAGAAACCAATCCAGA
LOC_Os01g68830
Os.42759.1.S1_at--608--3031Chr01:40321056..40321080 (25 bp)
AATCCAGAGACAATGGCTTTCCATC
LOC_Os01g68830
Os.42759.1.S1_at--130--8231Chr01:40321092..40321116 (25 bp)
GGCACCGTAATTGTGAGGCTCTTTC
LOC_Os01g68830
Os.42759.1.S1_at--707--911Chr01:40321107..40321131 (25 bp)
AGGCTCTTTCAAGGGATCCTCCAGT
LOC_Os01g68830
Os.42759.1.S1_at--758--6951Chr01:40321130..40321154 (25 bp)
GTAGCTCCTCTGCAGGATGATTGCA
LOC_Os01g68830
Os.42759.1.S1_at--51--3471Chr01:40321156..40321180 (25 bp)
CAGTGAAGGGCAGTCGAGCTCGTCA
LOC_Os01g68830
Os.42759.1.S1_at--103--7111Chr01:40321177..40321201 (25 bp)
GTCACCTGTTGAGCTACTGGAGTAT
LOC_Os01g68830
Os.42759.1.S1_at--916--1371Chr01:40321210..40321234 (25 bp)
AGACCACTTCAGTAGCGAGGAGGAA
LOC_Os01g68830
Os.42759.1.S1_at--507--951Chr01:40321230..40321254 (25 bp)
AGGAAACAATGTACTCAGCGGAAAC
LOC_Os01g68830
Target Sequence 
TACCGCTGCCCCTGAAGCAAATGCTTNCTGATGAGAACAACGCAGATACGTCCAAGCCTAGAAACCAATCCAGAGACAAT
GGCTTTCCATCGGGGATAATATGGCACCGTAATTGTGAGGCTCTTTCAAGGGATCCTCCAGTAGCTCCTCTGCAGGATGA
TTGCAGCAGTGAAGGGCAGTCGAGCTCGTCACCTGTTGAGCTACTGGAGTATCGAAATGAAGACCACTTCAGTAGCGAGG
AGGAAACAATGTACTCAGCGGAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis