Browse Element(s) Details


Os.19086.1.S1_at

Description gb:AK112102.1
DB_XREF= gi:37988765
TID=Os.19086.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19086 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative zinc finger protein (P0413C03.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-B05, full insert sequence.
FL= gb:AK112102.1 gb:AK111958.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6886011/11Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68820Os.31501.1.S1_s_at11/111+40312072..40313344expressed protein
LOC_Os01g68830Os.42759.1.S1_at11/111+40319029..40321959expressed protein
LOC_Os01g68830Os.4958.1.A1_at10/111+40319029..40321959expressed protein
LOC_Os01g68840OsAffx.21847.1.S1_s_at11/111+40324972..40325940expressed protein
LOC_Os01g68850OsAffx.9656.3.S1_x_at11/111+40326245..40327940hypothetical protein
LOC_Os01g68850OsAffx.9656.1.S1_x_at2/111+40326245..40327940hypothetical protein
LOC_Os01g68850Os.57362.1.S1_at1/111+40326245..40327940hypothetical protein
LOC_Os01g68860Os.19086.1.S1_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.1.S1_a_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.2.S1_x_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.3.S1_x_at7/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68870Os.23868.1.S1_at11/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68870Os.56430.1.S1_x_at1/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68870OsAffx.11967.1.S1_x_at1/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68880NANA1+40355323..40355577hypothetical protein
LOC_Os01g68890OsAffx.23977.1.S1_x_at11/111+40356970..40358278P21-Rho-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19086.1.S1_at--583--10791Chr01:40333347..40333371 (25 bp)
TTGTTTTCAGCCTGCTTTGCACTGC
LOC_Os01g68860
Os.19086.1.S1_at--270--3331Chr01:40333328..40333352 (25 bp)
CACTGCGGTGTTGTTTCATTTCAAA
LOC_Os01g68860
Os.19086.1.S1_at--1027--9911Chr01:40333278..40333302 (25 bp)
TACTGTGGCCTGTGGACGAACTCAA
LOC_Os01g68860
Os.19086.1.S1_at--857--6291Chr01:40333250..40333274 (25 bp)
GATGATCATCCTTTTTATCTGCATT
LOC_Os01g68860
Os.19086.1.S1_at--799--5991Chr01:40333197..40333221 (25 bp)
GAGAGCTCTATTCCGGAGGTGTATC
LOC_Os01g68860
Os.19086.1.S1_at--169--7331Chr01:40333136..40333160 (25 bp)
GTGCAGTGCAACTGAGTCTGGCCGT
LOC_Os01g68860
Os.19086.1.S1_at--1108--8451Chr01:40333118..40333142 (25 bp)
TGGCCGTCACGTCACAATCATTGTT
LOC_Os01g68860
Os.19086.1.S1_at--325--6451Chr01:40333034..40333058 (25 bp)
GATAAGGTGCCGAACCTGGTCCAAC
LOC_Os01g68860
Os.19086.1.S1_at--202--8591Chr01:40333018..40333042 (25 bp)
TGGTCCAACCAAGTTTCTCGTGGTA
LOC_Os01g68860
Os.19086.1.S1_at--415--9831Chr01:40332995..40333019 (25 bp)
TAAAGCATGCGTAAGCACCTGCCTA
LOC_Os01g68860
Os.19086.1.S1_at--473--2271Chr01:40332937..40332961 (25 bp)
AAATCTCTCTGAGGTGACCGATCTA
LOC_Os01g68860
Target Sequence 
TTGTTTTCAGCCTGCTTTGCACTGCGGTGTTGTTTCATTTCAAATGTGCATTCATGTCAGGTTGCAAGGTACTGTGGCCT
GTGGACGAACTCAATCTGATGATCATCCTTTTTATCTGCATTACATGTTGTATAATTGCATGGATTAGTTGAGAGCTCTA
TTCCGGAGGTGTATCTTAGCATGGTGAAGTTAAAATGGACAACAAAAGGCGGTGCAGTGCAACTGAGTCTGGCCGTCACG
TCACAATCATTGTTTTCTGTTCACAAGTAAAAACATGCAGCTTCCTTCCAACGACCAAAATTAATGCTGGCATGATAAGG
TGCCGAACCTGGTCCAACCAAGTTTCTCGTGGTAAAGCATGCGTAAGCACCTGCCTACTTCAGGTCAAAAGTTCAAAACT
ACAGGTTGTAAAATCTCTCTGAGGTGACCGATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis