Browse Element(s) Details


Os.31501.1.S1_s_at

Description gb:AK107234.1
DB_XREF= gi:32992443
TID=Os.31501.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0413C03.12 (P0413C03.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E10, full insert sequence.
FL= gb:AK107234.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6882011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68810Os.26433.1.S1_at10/111+40287152..40302766expressed protein
LOC_Os01g68820Os.31501.1.S1_s_at11/111+40312072..40313344expressed protein
LOC_Os01g68830Os.42759.1.S1_at11/111+40319029..40321959expressed protein
LOC_Os01g68830Os.4958.1.A1_at10/111+40319029..40321959expressed protein
LOC_Os01g68840OsAffx.21847.1.S1_s_at11/111+40324972..40325940expressed protein
LOC_Os01g68850OsAffx.9656.3.S1_x_at11/111+40326245..40327940hypothetical protein
LOC_Os01g68850OsAffx.9656.1.S1_x_at2/111+40326245..40327940hypothetical protein
LOC_Os01g68850Os.57362.1.S1_at1/111+40326245..40327940hypothetical protein
LOC_Os01g68860Os.19086.1.S1_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.1.S1_a_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.2.S1_x_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.3.S1_x_at7/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31501.1.S1_s_at--312--6671Chr01:40312780..40312804 (25 bp)
GTTGCAGGAGGCTCACGTCCACGCG
LOC_Os01g68820
Os.31501.1.S1_s_at--501--6411Chr01:40313139..40313163 (25 bp)
GATCTGATGCAGTGTGTCCGTTTTC
LOC_Os01g68820
Os.31501.1.S1_s_at--339--1111Chr01:40313149..40313173 (25 bp)
AGTGTGTCCGTTTTCAATGCCAGTC
LOC_Os01g68820
Os.31501.1.S1_s_at--903--10311Chr01:40313160..40313184 (25 bp)
TTTCAATGCCAGTCTTCGCTCTTAG
LOC_Os01g68820
Os.31501.1.S1_s_at--345--9351Chr01:40313175..40313199 (25 bp)
TCGCTCTTAGCTACTTGCAGTTGAC
LOC_Os01g68820
Os.31501.1.S1_s_at--682--1231Chr01:40313193..40313217 (25 bp)
AGTTGACTGCTGTCTCAGTCTGACT
LOC_Os01g68820
Os.31501.1.S1_s_at--904--1151Chr01:40313209..40313233 (25 bp)
AGTCTGACTGTCAAGTTTATCTTTA
LOC_Os01g68820
Os.31501.1.S1_s_at--615--4111Chr01:40313239..40313263 (25 bp)
CGCAAGTTTACTTTCATGTTTCTAA
LOC_Os01g68820
Os.31501.1.S1_s_at--985--3131Chr01:40313263..40313287 (25 bp)
AATTATCAGTTGTAATCGTCGATCG
LOC_Os01g68820
Os.31501.1.S1_s_at--301--511Chr01:40313277..40313301 (25 bp)
ATCGTCGATCGATGTAATAGCTCTA
LOC_Os01g68820
Os.31501.1.S1_s_at--699--7071Chr01:40313290..40313314 (25 bp)
GTAATAGCTCTAGATCTCCCGGATC
LOC_Os01g68820
Target Sequence 
GTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCGACGGCGAGGACGCCGCCGCCCGCGCCGCCGCCATCAGCGGCGCC
CGCGCCCTGGTCATGTGCAGCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGCTCCACGCCGGCGGCACCGACCT
GGGCCGCAACGTCACCGGCTACCCGTGGCTTGGCGACGAGATGGAGCTGACTCCTCCCGGCGCCGGCGGCCCCCATCTGT
AGGTTCGCCGCGGAGGTGGCCAGCCGTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCGGCGCGCGGCG
GAGGCGGCGGCGAGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCAGTGTGTCCGTTTTCAATGCCAGTCTTCGCT
CTTAGCTACTTGCAGTTGACTGCTGTCTCAGTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTT
CTAAATTATCAGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31501.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis