Browse Element(s) Details


Os.4958.1.A1_at

Description gb:CR287611
DB_XREF= gi:44674177
DB_XREF=CR287611
CLONE=p840d04p3
TID=Os.4958.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.4958 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566301.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6883010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68810Os.26433.1.S1_at10/111+40287152..40302766expressed protein
LOC_Os01g68820Os.31501.1.S1_s_at11/111+40312072..40313344expressed protein
LOC_Os01g68830Os.42759.1.S1_at11/111+40319029..40321959expressed protein
LOC_Os01g68830Os.4958.1.A1_at10/111+40319029..40321959expressed protein
LOC_Os01g68840OsAffx.21847.1.S1_s_at11/111+40324972..40325940expressed protein
LOC_Os01g68850OsAffx.9656.3.S1_x_at11/111+40326245..40327940hypothetical protein
LOC_Os01g68850OsAffx.9656.1.S1_x_at2/111+40326245..40327940hypothetical protein
LOC_Os01g68850Os.57362.1.S1_at1/111+40326245..40327940hypothetical protein
LOC_Os01g68860Os.19086.1.S1_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.1.S1_a_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.2.S1_x_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.3.S1_x_at7/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68870Os.23868.1.S1_at11/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68870Os.56430.1.S1_x_at1/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68870OsAffx.11967.1.S1_x_at1/111+40343452..40350702Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4958.1.A1_at--495--4271Chr01:40321589..40321613 (25 bp)
CCTGGTGGAATGTTAGTGCAGCATC
LOC_Os01g68830
Os.4958.1.A1_at--724--2711Chr01:40321618..40321642 (25 bp)
AAGCATGCCGATTTTTGGTGGAAAT
LOC_Os01g68830
Os.4958.1.A1_at--681--8151Chr01:40321637..40321661 (25 bp)
GGAAATTTGCTGCTCTCATGTTTTT
LOC_Os01g68830
Os.4958.1.A1_at--249--10671Chr01:40321685..40321709 (25 bp)
TTCCTTAGTTCTTTCTCTACGGCAT
LOC_Os01g68830
Os.4958.1.A1_at--216--10591Chr01:40321697..40321721 (25 bp)
TTCTCTACGGCATTGTGTGTGTGTG
LOC_Os01g68830
Os.4958.1.A1_at--98--7311Chr01:40321719..40321743 (25 bp)
GTGCGTGTGCAGAATGACTTGGATA
LOC_Os01g68830
Os.4958.1.A1_at--725--6451Chr01:40321803..40321827 (25 bp)
GATCAAATGTGTTCGAGGCATCAAG
LOC_Os01g68830
Os.4958.1.A1_at--175--8291NONE
GGCATCAAGCATGAGCTGTTTGCAA
NONE
Os.4958.1.A1_at--88--751Chr01:40321848..40321872 (25 bp)
ATGTATTTTGTTTGTAGGCTGTCTG
LOC_Os01g68830
Os.4958.1.A1_at--202--8351Chr01:40321864..40321888 (25 bp)
GGCTGTCTGGATGTAAATTGCTATA
LOC_Os01g68830
Os.4958.1.A1_at--808--10791Chr01:40321892..40321916 (25 bp)
TTGTACTGTAGTCTTGAGTTCACCA
LOC_Os01g68830
Target Sequence 
CCTGGTGGAATGTTAGTGCAGCATCAGCAAAGCATGCCGATTTTTGGTGGAAATTTGCTGCTCTCATGTTTTTTTCCTCT
GTAAGTTGATGCTNCGCTTCCTTAGTTCTTTCTCTACGGCATTGTGTGTGTGTGCGTGTGCAGAATGACTTGGATAAATA
AAANNAAAAAAAAGAAAGAAGAAAGAAAAGAGAAGTCCAACATAGAAGGTTTACAGATCAAATGTGTTCGAGGCATCAAG
CATGAGCTGTTTGCAAAGTGATGTATTTTGTTTGTAGGCTGTCTGGATGTAAATTGCTATAGCTTTGTACTGTAGTCTTG
AGTTCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4958.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis