Browse Element(s) Details


OsAffx.9656.3.S1_x_at

Description tigr:9629.m06842
TID=OsAffx.9656.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6885011/11hypothetical protein
LOC_Os10g336102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68810Os.26433.1.S1_at10/111+40287152..40302766expressed protein
LOC_Os01g68820Os.31501.1.S1_s_at11/111+40312072..40313344expressed protein
LOC_Os01g68830Os.42759.1.S1_at11/111+40319029..40321959expressed protein
LOC_Os01g68830Os.4958.1.A1_at10/111+40319029..40321959expressed protein
LOC_Os01g68840OsAffx.21847.1.S1_s_at11/111+40324972..40325940expressed protein
LOC_Os01g68850OsAffx.9656.3.S1_x_at11/111+40326245..40327940hypothetical protein
LOC_Os01g68850OsAffx.9656.1.S1_x_at2/111+40326245..40327940hypothetical protein
LOC_Os01g68850Os.57362.1.S1_at1/111+40326245..40327940hypothetical protein
LOC_Os01g68860Os.19086.1.S1_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.1.S1_a_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.2.S1_x_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.3.S1_x_at7/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68870Os.23868.1.S1_at11/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68870Os.56430.1.S1_x_at1/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68870OsAffx.11967.1.S1_x_at1/111+40343452..40350702Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9656.3.S1_x_at--188--3892Chr10:17390907..17390931 (25 bp)
CTGGGAGAGCTTGACTTTGACGGCC
LOC_Os10g33610
OsAffx.9656.3.S1_x_at--552--4631Chr01:40327828..40327852 (25 bp)
GCGATGCGGCGACAGTTCTCCTGCC
LOC_Os01g68850
OsAffx.9656.3.S1_x_at--582--4392Chr10:17390992..17391045 (25 bp)
GCCAACGATATTCCCGACCGGCGAA
LOC_Os10g33610
OsAffx.9656.3.S1_x_at--573--411Chr01:40327763..40327787 (25 bp)
ATCATCCGTGGCAGCGAAGCTGCAA
LOC_Os01g68850
OsAffx.9656.3.S1_x_at--1028--551Chr01:40327760..40327784 (25 bp)
ATCCGTGGCAGCGAAGCTGCAAAGG
LOC_Os01g68850
OsAffx.9656.3.S1_x_at--29--2771Chr01:40327624..40327648 (25 bp)
AAGACGCAGCTAATGACGAGGTCAT
LOC_Os01g68850
OsAffx.9656.3.S1_x_at--988--10491Chr01:40326747..40326771 (25 bp)
TTAATGGTGTAGTAAGGCTCTGTTC
LOC_Os01g68850
OsAffx.9656.3.S1_x_at--633--2971Chr01:40326745..40326769 (25 bp)
AATGGTGTAGTAAGGCTCTGTTCGT
LOC_Os01g68850
OsAffx.9656.3.S1_x_at--332--812Chr03:15813753..15814103 (25 bp)
ATGGTGTAGTAAGGCTCTGTTCGTT
NONE
OsAffx.9656.3.S1_x_at--617--7732Chr03:15932885..15932904 (20 bp)
GGTGTAGTAAGGCTCTGTTCGTTCT
NONE
OsAffx.9656.3.S1_x_at--774--4011Chr01:40326723..40326747 (25 bp)
CGTTCTGGGGAGATTTATTCTCGTT
LOC_Os01g68850
Target Sequence 
CTGGGAGAGCTTGACTTTGACGGCCGCGGGAGTTGCAGCCACGGGAGAGGATCTCGGCGATGCGGCGACAGTTCTCCTGC
CCGGCGCCAACGATATTCCCGACCGGCGAAGGGACGTCGACATCATCCGTGGCAGCGAAGCTGCAAAGGAAGAGAGGCAG
CGGGTGGCCTCGGCGAAGACGCAGCTAATGACGAGGTCATTGAGGATGGAGATGGGGGCCTTGTCAGTGGAGGCGGAGAC
AGAGGGAAGCCTGTTGAGGGAGACGGCGGCGCTACGGGCACAAGCCAAGGGCGTCGTGGAGGAGGGGAGGCGTGGGCGGG
GTGAGGAGGGAGGAGATGAGGTGGTGAGATCAGGTATTAATGGTGTAGTAAGGCTCTGTTCGTTCTGGGGAGATTTATTC
TCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9656.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis