Browse Element(s) Details


Os.3454.1.S1_at

Description gb:AK121341.1
DB_XREF= gi:37990964
TID=Os.3454.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3454 (NCBI UniGene Cluster)
UG_TITLE=Cultivar Stejaree45 sucrose phosphate synthase mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023120M11, full insert sequence.
FL= gb:AK121341.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6903010/11Sucrose-phosphate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68990Os.52238.1.S1_at3/111+40404837..40409259retrotransposon, putative, centromere-specific
LOC_Os01g69000NANA1+40411243..40412598retrotransposon, putative, centromere-specific
LOC_Os01g69010OsAffx.19817.2.S1_at11/111+40420562..40423832MATE efflux family protein
LOC_Os01g69010OsAffx.19817.1.S1_x_at7/111+40420562..40423832MATE efflux family protein
LOC_Os01g69020Os.37927.1.S1_at11/111+40424504..40425877transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g69030Os.3454.1.S1_at10/111+40428272..40433444Sucrose-phosphate synthase, putative, expressed
LOC_Os01g69040Os.27953.2.S1_at11/111+40442758..40447950Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g69040Os.27953.1.S1_x_at11/111+40442758..40447950Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g69050Os.11338.1.S1_at11/111+40454264..40459522lysine ketoglutarate reductase trans-splicing related 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3454.1.S1_at--404--1951Chr01:40428798..40428822 (25 bp)
ACGGCGACACCGATCACGAGGAGAT
LOC_Os01g69030
Os.3454.1.S1_at--844--8191Chr01:40428683..40428707 (25 bp)
GGAAGATGTTGTCCCATCCGAGAGC
LOC_Os01g69030
Os.3454.1.S1_at--347--5871Chr01:40428662..40428686 (25 bp)
GAGCCCCTTGATTGCTTTCACAAAG
LOC_Os01g69030
Os.3454.1.S1_at--575--611Chr01:40428613..40428637 (25 bp)
ATGCGTGCTCTCAAGGAGGTCACCA
LOC_Os01g69030
Os.3454.1.S1_at--782--11Chr01:40428568..40428592 (25 bp)
ATTGGTTGCCTGCTGGGAAGCCTAA
LOC_Os01g69030
Os.3454.1.S1_at--60--8871Chr01:40428505..40428529 (25 bp)
TGATGAAGTCTCCTGGCTCTTTAAC
LOC_Os01g69030
Os.3454.1.S1_at--734--2751Chr01:40428477..40428501 (25 bp)
AAGACAAGACTCTTTTTCTCTCCTT
LOC_Os01g69030
Os.3454.1.S1_at--825--10311Chr01:40428436..40428460 (25 bp)
TTATGGACCACTACCACGAACTTAC
LOC_Os01g69030
Os.3454.1.S1_at--889--3831Chr01:40428386..40428410 (25 bp)
CTGCTGATGCTACTGTTGGCTCAAA
LOC_Os01g69030
Os.3454.1.S1_at--1001--10191Chr01:40428326..40428350 (25 bp)
TTTTAATCCTGCACTTGGTTCAAGT
LOC_Os01g69030
Os.3454.1.S1_at--311--31Chr01:40428255..40428279 (25 bp)
ATTGGATTACTTGGCACGTTCTCTC
NONE
Target Sequence 
ACGGCGACACCGATCACGAGGAGATGCTGTCAGGGTTACACAAGACGGTGATCATCCGCGGCGTCACCGAGAAGGGCTCG
GAGCAGCTGGTGAGGAGCTCAGGGAGTTACCAGAGGGAAGATGTTGTCCCATCCGAGAGCCCCTTGATTGCTTTCACAAA
GGGTGATCTGAAGGCCGATGAGATCATGCGTGCTCTCAAGGAGGTCACCAAGGCTGCCAGTGGCATGTAAATTGGTTGCC
TGCTGGGAAGCCTAATATTACTCTGAANGCCTGGAAGAATCAGGAGTGCCANCTTGATGAAGTCTCCTGGCTCTTTAACT
GAAAGACAAGACTCTTTTTCTCTCCTTAATTTACAGCATAATCTTATGGACCACTACCACGAACTTACCTTGCAGTGAGA
AATAATTATGACACTGCTGATGCTACTGTTGGCTCAAATGTTTATGAGCTGATTCAGTTATATGTATTTTTTCTTTTAAT
CCTGCACTTGGTTCAAGTACGCATATCATGGCAATTCTCTTAATAATTTCGGTCCTTGTTCAGGATTGGATTACTTGGCA
CGTTCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis