Browse Element(s) Details


Os.19151.1.S1_at

Description gb:BM420264
DB_XREF= gi:18387066
DB_XREF=U009B05
CLONE=U009B05
TID=Os.19151.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.19151 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g061901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06160NANA12+2910704..2911579uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os12g06170OsAffx.19518.1.S1_at10/1112+2919443..2921117hypothetical protein
LOC_Os12g06180OsAffx.7498.1.S1_at11/1112+2930759..2933408HVA22-like protein j, putative, expressed
LOC_Os12g06190OsAffx.31611.1.S1_s_at11/1112+2933608..2934619expressed protein
LOC_Os12g06190Os.19151.1.S1_at1/1112+2933608..2934619expressed protein
LOC_Os12g06190Os.6844.1.S1_x_at1/1112+2933608..2934619expressed protein
LOC_Os12g06200Os.424.1.S1_at11/1112+2938696..2944050Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os12g06210OsAffx.19519.1.S1_at11/1112+2946868..2947542Harpin-induced protein 1 containing protein
LOC_Os12g06220Os.5354.1.S1_at11/1112+2949703..2950593Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06230OsAffx.7499.1.S1_at11/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.12219.1.A1_at10/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.7578.1.S1_at5/1112+2952126..2965407hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19151.1.S1_at--341--3831Chr12:2933989..2934015 (25 bp)
CGGCGACCGTCGGTTACTTGCTAAT
LOC_Os12g06190
Os.19151.1.S1_at--547--6171NONE
GAGGAGGAGATGATACGCAACACAA
NONE
Os.19151.1.S1_at--993--6171NONE
GAGGAGATGATACGCAACACAAGAG
NONE
Os.19151.1.S1_at--358--1291NONE
AGATGATACGCAACACAAGAGAGAT
NONE
Os.19151.1.S1_at--307--6491NONE
GATACGCAACACAAGAGAGATGTTT
NONE
Os.19151.1.S1_at--241--9951NONE
TACGCAACACAAGAGAGATGTTTGA
NONE
Os.19151.1.S1_at--689--6851NONE
GTTTGATTGCACTGGTAACAAGAAC
NONE
Os.19151.1.S1_at--304--6591NONE
GATTGCACTGGTAACAAGAACCAGA
NONE
Os.19151.1.S1_at--833--2731NONE
AAGAACCAGATTAGTTCAGCCTGAG
NONE
Os.19151.1.S1_at--160--5431NONE
GAACCAGATTAGTTCAGCCTGAGCT
NONE
Os.19151.1.S1_at--604--2631NONE
AACCAGATTAGTTCAGCCTGAGCTC
NONE
Target Sequence 
CGGCGACCGTCGGTTACTTGCTAATCNCACACTTGATTATTCCTCTCCCATTCTTCTCTCATTTTCTAGTCTATGTGTGA
TTAGACTATTTTTCTTTCTTAATTACCAACTTTAGAGGATTTGCTTGCGTTGGAATTTTTGTAAATAACTTGCTAGGATT
AGTCTCAAAGAGGAGGAGATGATACGCAACACAAGAGAGATGTTTGATTGCACTGGTAACAAGAACCAGATTAGTTCAGC
CTGAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis