Browse Element(s) Details


Os.19155.1.S1_at

Description gb:CB677984
DB_XREF= gi:29681709
DB_XREF=OSJNEe15H18.r
CLONE=OSJNEe15H18
TID=Os.19155.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=3
UG=Os.19155 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to membrane-associated salt-inducible protein isolog (B1064G04.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3787011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37832OsAffx.11366.1.S1_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37832Os.13544.1.S1_x_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37837Os.5952.4.S1_x_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37837Os.5952.2.S1_s_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37842Os.54221.1.A1_at11/111+21508294..21510864expressed protein
LOC_Os01g37842OsAffx.11367.1.S1_x_at11/111+21508294..21510864expressed protein
LOC_Os01g37850Os.18128.1.S1_a_at11/111+21511789..21514271expressed protein
LOC_Os01g37860NANA1+21515576..21521235retrotransposon protein, putative, unclassified, expressed
LOC_Os01g37870Os.19155.1.S1_at11/111+21522279..21528594pentatricopeptide, putative, expressed
LOC_Os01g37880NANA1+21534444..21537679transposon protein, putative, unclassified
LOC_Os01g37890NANA1+21538313..21544468transposon protein, putative, unclassified
LOC_Os01g37900Os.2987.3.S1_x_at8/111+21546401..21549201transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19155.1.S1_at--622--7831Chr01:21527932..21527956 (25 bp)
GGTAACAAGTTATTCACCCTCATCC
LOC_Os01g37870
Os.19155.1.S1_at--329--9631Chr01:21527957..21527981 (25 bp)
TCATGTGTCCCAGGATCCAATCAAG
LOC_Os01g37870
Os.19155.1.S1_at--421--8591Chr01:21528002..21528026 (25 bp)
TGGTATTTCGTATGCATGTGGTGTA
LOC_Os01g37870
Os.19155.1.S1_at--636--5091Chr01:21528029..21528053 (25 bp)
GCACCCATGTTATGTTGTAATGCCT
LOC_Os01g37870
Os.19155.1.S1_at--185--3031Chr01:21528047..21528071 (25 bp)
AATGCCTGAGCTTGAGCTTGTCCAT
LOC_Os01g37870
Os.19155.1.S1_at--597--4931Chr01:21528062..21528086 (25 bp)
GCTTGTCCATTTTAGTCAGGCTATT
LOC_Os01g37870
Os.19155.1.S1_at--854--7111Chr01:21528076..21528100 (25 bp)
GTCAGGCTATTCAGGGTGAGATTCC
LOC_Os01g37870
Os.19155.1.S1_at--224--7391Chr01:21528091..21528115 (25 bp)
GTGAGATTCCACAAGAGCTGCAGAT
LOC_Os01g37870
Os.19155.1.S1_at--781--10471Chr01:21528239..21528263 (25 bp)
TTAACACTATGAACCTTCTTGAAGG
LOC_Os01g37870
Os.19155.1.S1_at--957--2071Chr01:21528321..21528345 (25 bp)
ACATACTTGTTTTTACGTGCCTTGA
LOC_Os01g37870
Os.19155.1.S1_at--270--2251Chr01:21528522..21528546 (25 bp)
AAATACTGTTTTGGTATATGGCCCA
LOC_Os01g37870
Target Sequence 
GGTAACAAGTTATTCACCCTCATCCTCATGTGTCCCAGGATCCAATCAAGATTCATCAGAATTACAGATNTGGTATTTCG
TATGCATGTGGTGTAAAGCACCCATGTTATGTTGTAATGCCTGAGCTTGAGCTTGTCCATTTTAGTCAGGCTATTCAGGG
TGAGATTCCACAAGAGCTGCAGATGGGACTAGTAAGTGGTAGGCAAGTNTTGCTCAAGACTGCAAACAGGCATACAATTA
ACACTATGAACCTTCTTGAAGGAACTAGTATGCTACATAGATNTGGAAACCTGAGCAGATTTCAAATTTTGTTGGTTGTA
CATACTTGTTTTTACGTGCCTTGAAACATGAAAGGAACAATTTGNTAAGGCGCTGAATAAGATGGATTGGCAAATATTCA
ATGGAACTCAGAGTCAGAGGTAGAACTTCAGTTTGGACAAATATGGTCGCAGTTTGTTTTNTTCGGTTTGGTGTCATCAT
GAAACCAAGTCTTGGTTCAGAACAAGGACCATGGGTTCACAAATACTGTTTTGGTATATGGCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis