Browse Element(s) Details


Os.54221.1.A1_at

Description gb:AK102611.1
DB_XREF= gi:32987820
TID=Os.54221.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54221 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099D01, full insert sequence.
FL= gb:AK102611.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3784211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37825Os.6069.1.S1_at11/111+21488749..21494266peptidase M16 family protein, putative, expressed
LOC_Os01g37832OsAffx.11366.1.S1_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37832Os.13544.1.S1_x_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37837Os.5952.4.S1_x_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37837Os.5952.2.S1_s_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37842Os.54221.1.A1_at11/111+21508294..21510864expressed protein
LOC_Os01g37842OsAffx.11367.1.S1_x_at11/111+21508294..21510864expressed protein
LOC_Os01g37850Os.18128.1.S1_a_at11/111+21511789..21514271expressed protein
LOC_Os01g37860NANA1+21515576..21521235retrotransposon protein, putative, unclassified, expressed
LOC_Os01g37870Os.19155.1.S1_at11/111+21522279..21528594pentatricopeptide, putative, expressed
LOC_Os01g37880NANA1+21534444..21537679transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54221.1.A1_at--357--7731Chr01:21509988..21510012 (25 bp)
GGTGGAATCCTGTGGAACATCTTGA
LOC_Os01g37842
Os.54221.1.A1_at--751--10731Chr01:21510009..21510033 (25 bp)
TTGAAGTCACGGGAGCCAAAGGCAT
LOC_Os01g37842
Os.54221.1.A1_at--1002--3231Chr01:21510409..21510433 (25 bp)
CAAGCTCACAGGGAAGTGCGCTAAT
LOC_Os01g37842
Os.54221.1.A1_at--951--471Chr01:21510470..21510494 (25 bp)
ATCGGATGATCCTGAGCGGTTAATT
LOC_Os01g37842
Os.54221.1.A1_at--237--8071Chr01:21510500..21510524 (25 bp)
GGAGAAGTCACCACATGTACCTGAT
LOC_Os01g37842
Os.54221.1.A1_at--794--10451Chr01:21510549..21510573 (25 bp)
TTAGCAGACAGGATTCGTGTTCTTG
LOC_Os01g37842
Os.54221.1.A1_at--905--3991Chr01:21510564..21510588 (25 bp)
CGTGTTCTTGTTGCTTATGATGATC
LOC_Os01g37842
Os.54221.1.A1_at--442--5331Chr01:21510628..21510652 (25 bp)
GAAGTATTTCGAAAGTCTTGCCCTT
LOC_Os01g37842
Os.54221.1.A1_at--368--2591Chr01:21510655..21510679 (25 bp)
AACCCCTCTTGAGCGTTAATTCTTG
LOC_Os01g37842
Os.54221.1.A1_at--573--2111Chr01:21510729..21510753 (25 bp)
ACAGTGAGGCAATTCTTTTTCCAAT
LOC_Os01g37842
Os.54221.1.A1_at--103--3191Chr01:21510750..21510774 (25 bp)
CAATTTTGCCTTTATATGTGCCTGA
LOC_Os01g37842
Target Sequence 
GGTGGAATCCTGTGGAACATCTTGAAGTCACGGGAGCCAAAGGCATATAAGGAAATTATGGCGAAGGGAAGGGAGCTTGA
GAAGCAATTCAGGTACAAACAAGGCAGGCCGCAAACAAGCAGAAATGAAGATGCAAGCTCACAGGGAAGTGCGCTAATTG
ACGAGGATATTGAACCACATGGTGAAAAGGAAGTATCGGATGATCCTGAGCGGTTAATTGACGCGGAGAAGTCACCACAT
GTACCTGATAATAACAAAGCTGAACGCAAACCATTAGCAGACAGGATTCGTGTTCTTGTTGCTTATGATGATCTATTTGA
AGAGGGAGAGATACACGAAGGGGATGCGCCATGAAGTATTTCGAAAGTCTTGCCCTTTCAACCCCTCTTGAGCGTTAATT
CTTGAAGCAAACATCACCGAATGGGAAAAAGGGCATGTGTATTAATCGACATTACAGTGAGGCAATTCTTTTTCCAATTT
TGCCTTTATATGTGCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54221.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis