Browse Element(s) Details


Os.6069.1.S1_at

Description gb:AK058447.1
DB_XREF= gi:32968465
TID=Os.6069.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6069 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative zinc protease PQQL (B1144D11.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-G07, full insert sequence.
FL= gb:AK058447.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3782511/11peptidase M16 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37790Os.20002.1.S1_at11/111+21465717..21469941expressed protein
LOC_Os01g37800Os.6802.1.S1_at11/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37800Os.57451.1.S1_x_at3/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37810OsAffx.23546.1.S1_at11/111+21477308..21477697expressed protein
LOC_Os01g37820Os.38090.2.S1_x_at11/111+21478387..21482486expressed protein
LOC_Os01g37820Os.38090.1.S1_at11/111+21478387..21482486expressed protein
LOC_Os01g37825Os.6069.1.S1_at11/111+21488749..21494266peptidase M16 family protein, putative, expressed
LOC_Os01g37832OsAffx.11366.1.S1_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37832Os.13544.1.S1_x_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37837Os.5952.4.S1_x_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37837Os.5952.2.S1_s_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37842Os.54221.1.A1_at11/111+21508294..21510864expressed protein
LOC_Os01g37842OsAffx.11367.1.S1_x_at11/111+21508294..21510864expressed protein
LOC_Os01g37850Os.18128.1.S1_a_at11/111+21511789..21514271expressed protein
LOC_Os01g37860NANA1+21515576..21521235retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6069.1.S1_at--943--2311Chr01:21493722..21493744 (23 bp)
AAAGATTTTGGCTGGCATGGCTGGC
LOC_Os01g37825
Os.6069.1.S1_at--1157--6031Chr01:21493792..21493816 (25 bp)
GAGATCATAGCACGTCTATCACGCT
LOC_Os01g37825
Os.6069.1.S1_at--717--10171Chr01:21493808..21493832 (25 bp)
TATCACGCTCTCGACTGTTTTAGTA
LOC_Os01g37825
Os.6069.1.S1_at--453--2231Chr01:21493857..21493881 (25 bp)
ACAATCATCTGCTTGACTCCAGGTA
LOC_Os01g37825
Os.6069.1.S1_at--669--5791Chr01:21493890..21493914 (25 bp)
GACGACAAGATTTTGGTTTCCTCCT
LOC_Os01g37825
Os.6069.1.S1_at--203--6351Chr01:21493917..21493941 (25 bp)
GATGCTGCTTCCTATCTGAGAGTGG
LOC_Os01g37825
Os.6069.1.S1_at--99--6271Chr01:21493941..21493965 (25 bp)
GATGTGGTGATTGTCCGTCACAGAA
LOC_Os01g37825
Os.6069.1.S1_at--938--6951Chr01:21493984..21494008 (25 bp)
GTAGCTAACAGATTCATTGCCGCAT
LOC_Os01g37825
Os.6069.1.S1_at--498--611Chr01:21494007..21494031 (25 bp)
ATGCGTGCGCTAAGCCTGTAACACA
LOC_Os01g37825
Os.6069.1.S1_at--27--6291Chr01:21494081..21494105 (25 bp)
GATGTATATTGACACCTCCCATTTC
LOC_Os01g37825
Os.6069.1.S1_at--282--192Chr03:9864340..9864425 (25 bp)
ATTTCATTTGATCCTCTAGACTGCA
NONE
Target Sequence 
AAAGATTTTGGCTGGCATGGCTGGCGCAATAGTGTTAGCGGTCAGTTTGTGGAGATACTCACGTAGCACATTGAGATCAT
AGCACGTCTATCACGCTCTCGACTGTTTTAGTAAGATCCAAAAATGGATCTGTCAAGACAATCATCTGCTTGACTCCAGG
TACATGAGCTGACGACAAGATTTTGGTTTCCTCCTGGGATGCTGCTTCCTATCTGAGAGTGGATGTGGTGATTGTCCGTC
ACAGAAGAAAGTATACAGAAATTGGTAGCTAACAGATTCATTGCCGCATGCGTGCGCTAAGCCTGTAACACAACACCATA
CGATTCTTTTGTCGCAGCATACGTGCCCCGTAACAGCCACTGATGTATATTGACACCTCCCATTTCATTTGATCCTCTAG
ACTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis