Browse Element(s) Details


OsAffx.11367.1.S1_x_at

Description tigr:9629.m03587
TID=OsAffx.11367.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=seryl-tRNA synthetase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3784211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37825Os.6069.1.S1_at11/111+21488749..21494266peptidase M16 family protein, putative, expressed
LOC_Os01g37832OsAffx.11366.1.S1_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37832Os.13544.1.S1_x_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37837Os.5952.4.S1_x_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37837Os.5952.2.S1_s_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37842Os.54221.1.A1_at11/111+21508294..21510864expressed protein
LOC_Os01g37842OsAffx.11367.1.S1_x_at11/111+21508294..21510864expressed protein
LOC_Os01g37850Os.18128.1.S1_a_at11/111+21511789..21514271expressed protein
LOC_Os01g37860NANA1+21515576..21521235retrotransposon protein, putative, unclassified, expressed
LOC_Os01g37870Os.19155.1.S1_at11/111+21522279..21528594pentatricopeptide, putative, expressed
LOC_Os01g37880NANA1+21534444..21537679transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11367.1.S1_x_at--432--1791Chr01:21508414..21508438 (25 bp)
ACCGAGAGCGTGTGTGGGTCACCTC
LOC_Os01g37842
OsAffx.11367.1.S1_x_at--1009--8171Chr01:21508538..21508562 (25 bp)
GGAAGCCCTAGACTACGACGGCGAT
LOC_Os01g37842
OsAffx.11367.1.S1_x_at--144--991Chr01:21508612..21508636 (25 bp)
AGGAGGATCCTGTAGCCATCACCGC
LOC_Os01g37842
OsAffx.11367.1.S1_x_at--587--5371Chr01:21508736..21508760 (25 bp)
GAAGAAATCCGCGAGGACGAAGAAC
LOC_Os01g37842
OsAffx.11367.1.S1_x_at--1070--6371Chr01:21508787..21509278 (25 bp)
GATCGCCGACATTAACAGATTTGTT
LOC_Os01g37842
OsAffx.11367.1.S1_x_at--599--6751Chr01:21509276..21509300 (25 bp)
GTTAATGAAACTTGCAAGCGCTTGA
LOC_Os01g37842
OsAffx.11367.1.S1_x_at--73--5391Chr01:21509305..21509329 (25 bp)
GAAGAAGTCCTATCTTGTTTGGAAT
LOC_Os01g37842
OsAffx.11367.1.S1_x_at--661--8771Chr01:21509320..21509344 (25 bp)
TGTTTGGAATGCTGTTGGCTGCCTT
LOC_Os01g37842
OsAffx.11367.1.S1_x_at--322--8331Chr01:21509336..21509360 (25 bp)
GGCTGCCTTGGTGTTTCTGCTATCA
LOC_Os01g37842
OsAffx.11367.1.S1_x_at--542--7431Chr01:21509346..21509370 (25 bp)
GTGTTTCTGCTATCAGTGATCTTGT
LOC_Os01g37842
OsAffx.11367.1.S1_x_at--377--6431Chr01:21509363..21509614 (25 bp)
GATCTTGTTAGAGAGTTACATGGAT
LOC_Os01g37842
Target Sequence 
ACCGAGAGCGTGTGTGGGTCACCTCGTGCCCTAGCGGGGCGCCCCATCGTGGTGGTGGTGGTGGTGGAGGATCCCGCGCC
GGCATGGAGGGAGGGGACAGCGTCCTGGACGCGGTGCTCGACGAGGAAGCCCTAGACTACGACGGCGATGACGTCGAGAT
GGCGGACGCGGACGACGCCGTAGAGGAGGCGCAGGCGCAGGAGGATCCTGTAGCCATCACCGCCCCCACTGCCGCCGCCA
CCGGAGGAGGAGGAGGAGGAGGAGAAGGCGATGGCGGCGTGGGGCAGGCGGGGAAGAACAAGAACAAGAAGAAGAAGAAG
AGGAAGAAATCCGCGAGGACGAAGAACAAGGGGAAGCCCGACGGGCCGCCCAAGATCGCCGACATTAACAGATTTGTTAA
TGAAACTTGCAAGCGCTTGAAGGAGAAGAAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCA
GTGATCTTGTTAGAGAGTTACATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11367.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis