Browse Element(s) Details


Os.19228.1.S1_at

Description gb:AK109547.1
DB_XREF= gi:32994756
TID=Os.19228.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19228 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-E09, full insert sequence.
FL= gb:AK109547.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2048011/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20460NANA9+12318666..12319982VQ motif family protein, expressed
LOC_Os09g20470OsAffx.29940.1.S1_x_at4/119+12341440..12341811hypothetical protein
LOC_Os09g20480Os.19228.1.S1_at11/119+12344751..12348658transporter, putative, expressed
LOC_Os09g20490OsAffx.17800.1.S1_at11/119+12354828..12358222transporter, putative, expressed
LOC_Os09g20500OsAffx.17800.2.S1_at11/119+12359741..12362625hypothetical protein
LOC_Os09g20510OsAffx.29941.1.S1_at11/119+12363873..12366414Major Facilitator Superfamily protein
LOC_Os09g20520OsAffx.17801.1.S1_at11/119+12368673..12370254Major Facilitator Superfamily protein
LOC_Os09g20530NANA9+12371139..12371660Pyruvate decarboxylase isozyme 3, putative

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19228.1.S1_at--384--9931Chr09:12348065..12348089 (25 bp)
TACGGAGCCGGATCGAGCAGTGACA
LOC_Os09g20480
Os.19228.1.S1_at--706--10531Chr09:12348158..12348182 (25 bp)
TTCATCTACTCCCTGCTGTATGGCA
LOC_Os09g20480
Os.19228.1.S1_at--1160--8751Chr09:12348174..12348198 (25 bp)
TGTATGGCACGTACCCGCGCGACAG
LOC_Os09g20480
Os.19228.1.S1_at--202--4071Chr09:12348207..12348231 (25 bp)
CGAGGATGGACACCTTGATCGCGTC
LOC_Os09g20480
Os.19228.1.S1_at--971--2711Chr09:12348289..12348313 (25 bp)
AAGCAAGGATGGCACCGTGATCGAT
LOC_Os09g20480
Os.19228.1.S1_at--1140--5551Chr09:12348367..12348391 (25 bp)
GAAAGCGTTGATGCGTTACCATGTT
LOC_Os09g20480
Os.19228.1.S1_at--297--3331Chr09:12348509..12348533 (25 bp)
CACGGGTTCAGTAATTCCAGGTCCT
LOC_Os09g20480
Os.19228.1.S1_at--880--3151Chr09:12348521..12348545 (25 bp)
AATTCCAGGTCCTAGTTTGCACCAT
LOC_Os09g20480
Os.19228.1.S1_at--171--1211Chr09:12348534..12348558 (25 bp)
AGTTTGCACCATTGTAGCCAGCTTT
LOC_Os09g20480
Os.19228.1.S1_at--828--8731Chr09:12348546..12348570 (25 bp)
TGTAGCCAGCTTTTCAGTGAACTAG
LOC_Os09g20480
Os.19228.1.S1_at--933--3351Chr09:12348581..12348605 (25 bp)
CACGCGATGCGTGGGTATGTATTAT
LOC_Os09g20480
Target Sequence 
TACGGAGCCGGATCGAGCAGTGACAGGGAGAACGCCGCTGCCCTGGCCAAGGCTCTGTACACCGCGATCGCCATCCCCAT
GCTGCTCTGCTGCTTCATCTACTCCCTGCTGTATGGCACGTACCCGCGCGACAGGGAGAGGGCGAGGATGGACACCTTGA
TCGCGTCGGAGCTCCAGCAGATCGAGCTGGAGCGGTGCCATCGGGCAGGAATAGGAAGTAGGAGAAGCAAGGATGGCACC
GTGATCGATGTCGAGTATGGTGAGGAAGAGTCTGGTGATGTTGTTGATGATGATGATGATGAGAAAGCGTTGATGCGTTA
CCATGTTGAACAGTGTGGCAGTGTTGGCAGGTGACCAAAGGAGTGATCAGGTCAGAAAAGCTCCTGAACTTCATGATACA
NTCTGCCAAAAATTTTCCACGGTTTTTGTACAGGAAACAGATTACACGGGTTCAGTAATTCCAGGTCCTAGTTTGCACCA
TTGTAGCCAGCTTTTCAGTGAACTAGGAAGGTAGCCCACGCGATGCGTGGGTATGTATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis