Browse Element(s) Details


Os.19280.1.A1_at

Description gb:CA759317
DB_XREF= gi:25803356
DB_XREF=BR060014B10E08.ab1
CLONE=BR060014B10E08.ab1
TID=Os.19280.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.19280 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3775011/11Cellulase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37730Os.55174.1.S1_at11/118+23761711..23763788Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37730Os.16502.1.S1_at1/118+23761711..23763788Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37740NANA8+23769952..23773292retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g37750OsAffx.17383.1.S1_at11/118+23780739..23784305Cellulase containing protein, expressed
LOC_Os08g37750Os.19280.1.A1_at11/118+23780739..23784305Cellulase containing protein, expressed
LOC_Os08g37760Os.17554.1.S1_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37760OsAffx.17384.1.S1_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37760OsAffx.17384.1.S1_s_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37770NANA8+23792703..23792963hypothetical protein
LOC_Os08g37780Os.21267.1.S1_at10/118+23794065..23801478NOL1/NOP2/sun family protein, expressed
LOC_Os08g37790Os.7759.1.S1_at10/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os08g37790OsAffx.14941.4.S1_s_at1/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19280.1.A1_at--341--5351Chr08:23784097..23784121 (25 bp)
GAAGATATACGATTCACTCTCTCTC
LOC_Os08g37750
Os.19280.1.A1_at--725--2031Chr08:23784141..23784165 (25 bp)
ACTATGATATAGCAGAAGTGTCCAT
LOC_Os08g37750
Os.19280.1.A1_at--147--1471Chr08:23784154..23784178 (25 bp)
AGAAGTGTCCATTCTTTGGTCAAAA
LOC_Os08g37750
Os.19280.1.A1_at--720--10371Chr08:23784185..23784209 (25 bp)
TTTTCCTAGTAAATCGAGAGAACGC
LOC_Os08g37750
Os.19280.1.A1_at--1078--1431Chr08:23784203..23784227 (25 bp)
AGAACGCAGTGCAGCCTTTGTTGAA
LOC_Os08g37750
Os.19280.1.A1_at--746--1111Chr08:23784210..23784234 (25 bp)
AGTGCAGCCTTTGTTGAACCTGTGA
LOC_Os08g37750
Os.19280.1.A1_at--664--4451Chr08:23784216..23784240 (25 bp)
GCCTTTGTTGAACCTGTGACTCTGA
LOC_Os08g37750
Os.19280.1.A1_at--1140--5431Chr08:23784225..23784249 (25 bp)
GAACCTGTGACTCTGAATTCTTCCT
LOC_Os08g37750
Os.19280.1.A1_at--413--8691Chr08:23784230..23784254 (25 bp)
TGTGACTCTGAATTCTTCCTCCTTA
LOC_Os08g37750
Os.19280.1.A1_at--500--8991Chr08:23784238..23784262 (25 bp)
TGAATTCTTCCTCCTTATCTGAATC
LOC_Os08g37750
Os.19280.1.A1_at--1008--3631Chr08:23784244..23784268 (25 bp)
CTTCCTCCTTATCTGAATCCTAAAG
LOC_Os08g37750
Target Sequence 
GAAGATATACGATTCACTCTCTCTCTCTCACAGTTTTTTTTTACACTATGATATAGCAGAAGTGTCCATTCTTTGGTCAA
AAGAATTTTTTTCCTAGTAAATCGAGAGAACGCAGTGCAGCCTTTGTTGAACCTGTGACTCTGAATTCTTCCTCCTTATC
TGAATCCTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19280.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis