Browse Element(s) Details


Os.19296.1.S1_at

Description gb:AK070987.1
DB_XREF= gi:32981010
TID=Os.19296.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19296 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033001M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023076E04, full insert sequence.
FL= gb:AK070987.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3832010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38310OsAffx.5044.1.S1_at10/116+22671920..22673617hypothetical protein
LOC_Os06g38320Os.19296.2.S1_at11/116+22698046..22704079expressed protein
LOC_Os06g38320Os.19296.1.S1_at10/116+22698046..22704079expressed protein
LOC_Os06g38330OsAffx.27987.1.S1_at11/116+22708740..22709114hypothetical protein
LOC_Os06g38340Os.53763.1.A1_at11/116+22709848..22713669Leucine Rich Repeat family protein, expressed
LOC_Os06g38350OsAffx.15818.1.S1_at11/116+22726469..22726801hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19296.1.S1_at--75--9831NONE
TAACAAGAGCCTCAACGCAGAGCAG
NONE
Os.19296.1.S1_at--368--3251Chr06:22703766..22703790 (25 bp)
CAACGCAGAGCAGGGAAGACTTCCA
LOC_Os06g38320
Os.19296.1.S1_at--759--8191Chr06:22703779..22703803 (25 bp)
GGAAGACTTCCAAGCATTATACCCC
LOC_Os06g38320
Os.19296.1.S1_at--937--751Chr06:22703829..22703853 (25 bp)
ATGTAAGCCATCTTTTGCCAGTTCT
LOC_Os06g38320
Os.19296.1.S1_at--349--10691Chr06:22703843..22703867 (25 bp)
TTGCCAGTTCTTTTGCAGACAGAAT
LOC_Os06g38320
Os.19296.1.S1_at--339--3151Chr06:22703865..22703889 (25 bp)
AATTCCAATATGCAGGGATTCAGAT
LOC_Os06g38320
Os.19296.1.S1_at--629--7671Chr06:22703879..22703903 (25 bp)
GGGATTCAGATCATTCTCATTTTGT
LOC_Os06g38320
Os.19296.1.S1_at--656--2411Chr06:22703922..22703946 (25 bp)
AAAAATCTTTGCTTCGGCATACTCT
LOC_Os06g38320
Os.19296.1.S1_at--123--3111Chr06:22703954..22703978 (25 bp)
AATAGCTTTGAATTCTGGACCCCTG
LOC_Os06g38320
Os.19296.1.S1_at--320--10671Chr06:22703961..22703985 (25 bp)
TTGAATTCTGGACCCCTGGAACCAA
LOC_Os06g38320
Os.19296.1.S1_at--1036--10831Chr06:22703989..22704013 (25 bp)
TTGGTCACACTGTCAATATTTTAAC
LOC_Os06g38320
Target Sequence 
TAACAAGAGCCTCAACGCAGAGCAGGGAAGACTTCCAAGCATTATACCCCCTAGCTCTGCCAAAGTATGAAGAATATGTA
AGCCATCTTTTGCCAGTTCTTTTGCAGACAGAATTCCAATATGCAGGGATTCAGATCATTCTCATTTTGTTCTTTCTGTT
GGAGTTAGAAAAATCTTTGCTTCGGCATACTCTCAAATATAATAGCTTTGAATTCTGGACCCCTGGAACCAATTNTTGGT
CACACTGTCAATATTTTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis