Browse Element(s) Details


Os.19296.2.S1_at

Description gb:AK073185.1
DB_XREF= gi:32983208
TID=Os.19296.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19296 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033001M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033001M17, full insert sequence.
FL= gb:AK073185.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3832011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38310OsAffx.5044.1.S1_at10/116+22671920..22673617hypothetical protein
LOC_Os06g38320Os.19296.2.S1_at11/116+22698046..22704079expressed protein
LOC_Os06g38320Os.19296.1.S1_at10/116+22698046..22704079expressed protein
LOC_Os06g38330OsAffx.27987.1.S1_at11/116+22708740..22709114hypothetical protein
LOC_Os06g38340Os.53763.1.A1_at11/116+22709848..22713669Leucine Rich Repeat family protein, expressed
LOC_Os06g38350OsAffx.15818.1.S1_at11/116+22726469..22726801hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19296.2.S1_at--98--10111Chr06:22703198..22703222 (25 bp)
TATGGCATTGTTCCCTCCCACTAAT
LOC_Os06g38320
Os.19296.2.S1_at--374--6411Chr06:22703227..22703251 (25 bp)
GATCTTCTCCAAGCCTTGTTAGCTT
LOC_Os06g38320
Os.19296.2.S1_at--447--9931Chr06:22703246..22703270 (25 bp)
TAGCTTGTGGTTGTCTAAACTTTGC
LOC_Os06g38320
Os.19296.2.S1_at--726--9531Chr06:22703259..22703283 (25 bp)
TCTAAACTTTGCTTGACATATGGTC
LOC_Os06g38320
Os.19296.2.S1_at--769--3571Chr06:22703275..22703299 (25 bp)
CATATGGTCATTTATCTGGTATTTA
LOC_Os06g38320
Os.19296.2.S1_at--145--1351Chr06:22703338..22703362 (25 bp)
AGAGTTATGTTATTCTTGGTATACA
LOC_Os06g38320
Os.19296.2.S1_at--378--7751Chr06:22703414..22703438 (25 bp)
GGTGTAATTACATATCATTCTCAGT
LOC_Os06g38320
Os.19296.2.S1_at--412--7431Chr06:22703437..22703461 (25 bp)
GTGTAATGACATAACTTTGGCAATT
LOC_Os06g38320
Os.19296.2.S1_at--634--8091Chr06:22703473..22703497 (25 bp)
GGACCAGACTATATGCAGTTTGCAG
LOC_Os06g38320
Os.19296.2.S1_at--1116--7051Chr06:22703595..22703619 (25 bp)
GTAAGGTCATGTAACACAAAGGGTT
LOC_Os06g38320
Os.19296.2.S1_at--509--771Chr06:22703640..22703664 (25 bp)
ATGTGACTGTCTTGTTTAACTGGGA
LOC_Os06g38320
Target Sequence 
TATGGCATTGTTCCCTCCCACTAATCCCTGATCTTCTCCAAGCCTTGTTAGCTTGTGGTTGTCTAAACTTTGCTTGACAT
ATGGTCATTTATCTGGTATTTATATGTCTGAAATGTAGGAAGATTTGAAAATATCATTGAAGAGTTATGTTATTCTTGGT
ATACAATAATATTACCTCAATAAANTGGNGNTATCGTCTAGACAAANTAGGGAATTCTCGGTGTAATTACATATCATTCT
CAGTGTAATGACATAACTTTGGCAATTTNCTCTACAAAAGGACCAGACTATATGCAGTTTGCAGCTCCNTTTATCTGTCG
NTGTTTTTTAATTAACCCTTTANTTGTATATCTGATTTAGTNNNANTNNNAAANNNNNNNNNANTGTAGTTGTTATCAAA
ATTGTAAGGTCATGTAACACAAAGGGTTACTAAAGTGAAGTAAAGAAAATGTGACTGTCTTGTTTAACTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19296.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis