Browse Element(s) Details


Os.19522.1.A1_s_at

Description gb:AK111882.1
DB_XREF= gi:37988545
TID=Os.19522.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19522 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033048J08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033048J08, full insert sequence.
FL= gb:AK111882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2222011/11F-box-like/WD-repeat protein TBL1XR1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22220Os.19522.1.A1_s_at11/117+12422402..12438790F-box-like/WD-repeat protein TBL1XR1, putative, expressed
LOC_Os07g22230OsAffx.5398.1.S1_at11/117+12448851..12449123hypothetical protein
LOC_Os07g22240OsAffx.28537.1.S1_x_at11/117+12451497..12453154hypothetical protein
LOC_Os07g22250OsAffx.16358.1.S1_at11/117+12462786..12463442hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006397biological_processmRNA processing
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009909biological_processregulation of flower development
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19522.1.A1_s_at--45--1491Chr07:12438053..12438077 (25 bp)
AGCAAGGACGCCTTCTGTACAGCTT
LOC_Os07g22220
Os.19522.1.A1_s_at--571--8871Chr07:12438286..12438310 (25 bp)
TGAGTACTTAGCAAGTGGTTCCCTT
LOC_Os07g22220
Os.19522.1.A1_s_at--259--7911Chr07:12438302..12438326 (25 bp)
GGTTCCCTTGATCAATGCCTACACA
LOC_Os07g22220
Os.19522.1.A1_s_at--806--571Chr07:12438316..12438340 (25 bp)
ATGCCTACACATATGGTCCGTTAAA
LOC_Os07g22220
Os.19522.1.A1_s_at--952--2811Chr07:12438413..12438437 (25 bp)
AAGATTGCAGCATGTTTCTCGAACA
LOC_Os07g22220
Os.19522.1.A1_s_at--634--2471Chr07:12438437..12438461 (25 bp)
AACACAGTCTGTCTCATGGATTTCA
LOC_Os07g22220
Os.19522.1.A1_s_at--892--5031Chr07:12438501..12438525 (25 bp)
GCAGATGCTTGGCTATCTGTTCTTC
LOC_Os07g22220
Os.19522.1.A1_s_at--502--4311Chr07:12438578..12438602 (25 bp)
CCTTTAGTTTGCCAGTGCTTGTACA
LOC_Os07g22220
Os.19522.1.A1_s_at--664--4931Chr07:12438594..12438618 (25 bp)
GCTTGTACAGTTATTTCCTTGCGGA
LOC_Os07g22220
Os.19522.1.A1_s_at--1112--3051Chr07:12438655..12438679 (25 bp)
AATCTTTCCAACATCATGTCTTCGC
LOC_Os07g22220
Os.19522.1.A1_s_at--212--771Chr07:12438670..12438694 (25 bp)
ATGTCTTCGCAATGCTCATCGTATT
LOC_Os07g22220
Target Sequence 
AGCAAGGACGCCTTCTGTACAGCTTGGCTGGCCACAGGCAACCTGTGTATTCGNTCGCATTTANCCCTGGTGGTGAGTAC
TTAGCAAGTGGTTCCCTTGATCAATGCCTACACATATGGTCCGTTAAAGAAGGGAGGATCTTGAAGACATACAGAGGGAG
TGGTGGCATTTTTGAAGTGTGCTGGAATAAAGAAGGCAGCAAGATTGCAGCATGTTTCTCGAACAACACAGTCTGTCTCA
TGGATTTCAGGATGTAGTTTNAACCAGTGGATGGATGAAGTAATACAAGCAGATGCTTGGCTATCTGTTCTTCCGTGATC
AGCTGGGGAGAACAGGATTATTGCCTTAACTCTAGGTTTTAGGNACCTTTAGTTTGCCAGTGCTTGTACAGTTATTTCCT
TGCGGAGAAACTGACCATAGGATATAGTTATGTGTAGAGCGAAATCTTTCCAACATCATGTCTTCGCAATGCTCATCGTA
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19522.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis