Browse Element(s) Details


OsAffx.16358.1.S1_at

Description tigr:9635.m02098
TID=OsAffx.16358.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2225011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22220Os.19522.1.A1_s_at11/117+12422402..12438790F-box-like/WD-repeat protein TBL1XR1, putative, expressed
LOC_Os07g22230OsAffx.5398.1.S1_at11/117+12448851..12449123hypothetical protein
LOC_Os07g22240OsAffx.28537.1.S1_x_at11/117+12451497..12453154hypothetical protein
LOC_Os07g22250OsAffx.16358.1.S1_at11/117+12462786..12463442hypothetical protein
LOC_Os07g22260NANA7+12476857..12477153hypothetical protein
LOC_Os07g22270OsAffx.29789.3.S1_x_at11/117+12480598..12485144hAT family dimerisation domain containing protein
LOC_Os07g22270OsAffx.29789.1.S1_x_at7/117+12480598..12485144hAT family dimerisation domain containing protein
LOC_Os07g22270OsAffx.31885.2.S1_x_at2/117+12480598..12485144hAT family dimerisation domain containing protein
LOC_Os07g22280OsAffx.31760.1.S1_at1/117+12485759..12489857retrotransposon, putative, centromere-specific
LOC_Os07g22280OsAffx.31892.2.S1_x_at1/117+12485759..12489857retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16358.1.S1_at--461--10091Chr07:12462830..12462854 (25 bp)
TAGGATCCCATACAGGCAGACCAAT
LOC_Os07g22250
OsAffx.16358.1.S1_at--679--7111Chr07:12462887..12462911 (25 bp)
GTCATGGCCATCTCCTCTTAAAGGA
LOC_Os07g22250
OsAffx.16358.1.S1_at--786--7911Chr07:12462909..12463089 (25 bp)
GGATACAAAACCTGGTGTCCTATCA
LOC_Os07g22250
OsAffx.16358.1.S1_at--1020--9731Chr07:12463117..12463141 (25 bp)
TAATATGCCTGGACATCACGACTTC
LOC_Os07g22250
OsAffx.16358.1.S1_at--610--3691Chr07:12463145..12463169 (25 bp)
CTATCCCTTTCAGCTAGACATCAAG
LOC_Os07g22250
OsAffx.16358.1.S1_at--756--6011Chr07:12463292..12463316 (25 bp)
GAGAGATGTATTCTGCGGTTCAACT
LOC_Os07g22250
OsAffx.16358.1.S1_at--1117--9131Chr07:12463305..12463329 (25 bp)
TGCGGTTCAACTTGTGGGCCAACAG
LOC_Os07g22250
OsAffx.16358.1.S1_at--833--7551Chr07:12463320..12463344 (25 bp)
GGGCCAACAGTCAACTATCAACATT
LOC_Os07g22250
OsAffx.16358.1.S1_at--65--371Chr07:12463336..12463360 (25 bp)
ATCAACATTTCGCTCAGTTCCTGGT
LOC_Os07g22250
OsAffx.16358.1.S1_at--804--6691Chr07:12463352..12463376 (25 bp)
GTTCCTGGTCCAGAAGAAGCACATT
LOC_Os07g22250
OsAffx.16358.1.S1_at--108--7631Chr07:12463382..12463406 (25 bp)
GGGAAAGTATCTGCTTGCTCAGTTT
LOC_Os07g22250
Target Sequence 
TAGGATCCCATACAGGCAGACCAATCCAGATTTGGTCAAGTGGAAGTCAACATTCAGGTCATGGCCATCTCCTCTTAAAG
GATACAAAACCTGGTGTCCTATCACCCCAACTCTGCCAGATGTGAAGATGCTAATATGCCTGGACATCACGACTTCCATC
TATCCCTTTCAGCTAGACATCAAGTGTGATCATACTCTTAAGACAAAACAGATCCATGGAGGTTGGAAAGGATACATAGC
AAAACATAAAGGCACAGGATCTGTTTCTGAAAGGGAACATGTTGCATTCTTGGCCAAGTGGTTGGAGAGAGATGTATTCT
GCGGTTCAACTTGTGGGCCAACAGTCAACTATCAACATTTCGCTCAGTTCCTGGTCCAGAAGAAGCACATTCCTTTGGGA
AAGTATCTGCTTGCTCAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis