Browse Element(s) Details


Os.19596.1.S1_at

Description gb:AK068261.1
DB_XREF= gi:32978279
TID=Os.19596.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19596 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149C21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149C21, full insert sequence.
FL= gb:AK068261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5143011/11CRAL/TRIO domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51380Os.27392.1.S1_at11/113+29348210..29351926expressed protein
LOC_Os03g51390Os.8052.1.S1_at7/113+29352608..29353510expressed protein
LOC_Os03g51410NANA3+29361191..29361652hypothetical protein
LOC_Os03g51420NANA3+29362352..29362705hypothetical protein
LOC_Os03g51430Os.19596.1.S1_at11/113+29371755..29376000CRAL/TRIO domain containing protein, expressed
LOC_Os03g51440OsAffx.3575.1.S1_at11/113+29376948..29380996Leucine Rich Repeat family protein, expressed
LOC_Os03g51450NANA3+29383180..29383539hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19596.1.S1_at--96--7911Chr03:29375411..29375435 (25 bp)
GGTTGTCAAACATTTCCTTGACCCA
LOC_Os03g51430
Os.19596.1.S1_at--270--4991Chr03:29375482..29375506 (25 bp)
GCATGAAGATCCTGCACAAGTACAT
LOC_Os03g51430
Os.19596.1.S1_at--501--7011Chr03:29375501..29375525 (25 bp)
GTACATTGATCCAGAAGTCCTTCCT
LOC_Os03g51430
Os.19596.1.S1_at--729--5311Chr03:29375514..29375538 (25 bp)
GAAGTCCTTCCTGTAGAGTTTGGAG
LOC_Os03g51430
Os.19596.1.S1_at--780--10471Chr03:29375599..29375623 (25 bp)
TTAAAATGGCAAGCTTTTGGGCATC
LOC_Os03g51430
Os.19596.1.S1_at--402--2331Chr03:29375649..29375673 (25 bp)
AAAGTCATTAACGAGCACTCCGTCC
LOC_Os03g51430
Os.19596.1.S1_at--486--7231Chr03:29375670..29375694 (25 bp)
GTCCCCGAGGTTACGCAACAGTCGT
LOC_Os03g51430
Os.19596.1.S1_at--800--2491Chr03:29375686..29375710 (25 bp)
AACAGTCGTCGCTGGTGGCTGCGAA
LOC_Os03g51430
Os.19596.1.S1_at--584--6771Chr03:29375840..29375864 (25 bp)
GTTACAGCTCCATGTATTACTGCTA
LOC_Os03g51430
Os.19596.1.S1_at--364--2271Chr03:29375895..29375919 (25 bp)
AAATCTTTAGCTAACCGACCTGAGC
LOC_Os03g51430
Os.19596.1.S1_at--665--2611Chr03:29375907..29375931 (25 bp)
AACCGACCTGAGCTACAGATTCAGA
LOC_Os03g51430
Target Sequence 
GGTTGTCAAACATTTCCTTGACCCAAAATCAATCCAGAAGGTGAATTTTGTATACCTGAAGAACGAGGAGAGCATGAAGA
TCCTGCACAAGTACATTGATCCAGAAGTCCTTCCTGTAGAGTTTGGAGGAAAGAACAATGTGGTGTACAGCCATGAGGAG
TACTCCAAGTTGATGGTGAAAGATGACATTAAAATGGCAAGCTTTTGGGCATCGGATACAAAAACTGACCATGTTAACAA
AGTCATTAACGAGCACTCCGTCCCCGAGGTTACGCAACAGTCGTCGCTGGTGGCTGCGAAAGCGAGCTGAGGAGTATCAA
TCTGCCATGATGGGGGTTATAAACCAAAACAAATTCTAAAAGACGATGTAGAGGACTATTGGTATGTTCATGATAAATAA
NANTGGAACTGCAGAATAATTTACCTGGGATGTTACAGCTCCATGTATTACTGCTAAAAATCTTTAGCTAAAGACCAGTC
TACAAAAAATCTTTAGCTAACCGACCTGAGCTACAGATTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis