Browse Element(s) Details


Os.19618.1.S1_at

Description gb:AK120948.1
DB_XREF= gi:37990571
TID=Os.19618.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative FtsH protease (B1151A10.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038C10, full insert sequence.
FL= gb:AK120948.1 gb:AK062071.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3926011/11ATP-dependent metalloprotease FtsH family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39200NANA1+22380476..22385348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39210NANA1+22387929..22388258hypothetical protein
LOC_Os01g39220OsAffx.23571.1.S1_at11/111+22391168..22391587LOB domain protein 22, putative
LOC_Os01g39220OsAffx.23571.1.S1_x_at11/111+22391168..22391587LOB domain protein 22, putative
LOC_Os01g39230NANA1+22394645..22395088hypothetical protein
LOC_Os01g39250Os.12205.1.S1_at11/111+22401234..22406708ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g39260Os.19618.1.S1_at11/111+22409139..22415086ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g39270Os.16736.1.S1_at11/111+22415051..22417932NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g39270Os.16736.1.S1_s_at11/111+22415051..22417932NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g39270Os.40799.1.S1_at10/111+22415051..22417932NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g39280Os.36435.2.S1_x_at11/111+22418395..22418736pyridoxin biosynthesis protein ER1, putative
LOC_Os01g39280OsAffx.20707.1.S1_x_at1/111+22418395..22418736pyridoxin biosynthesis protein ER1, putative
LOC_Os01g39280OsAffx.20707.2.S1_x_at1/111+22418395..22418736pyridoxin biosynthesis protein ER1, putative
LOC_Os01g39290Os.52512.1.S1_at3/111+22425382..22426396Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0010206biological_processphotosystem II repair
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0008233molecular_functionpeptidase activity
GO:0008237molecular_functionmetallopeptidase activity
GO:0008270molecular_functionzinc ion binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19618.1.S1_at--666--4491Chr01:22414568..22414592 (25 bp)
GCCGGTATCGGATCTTAGCAGTCAC
LOC_Os01g39260
Os.19618.1.S1_at--1056--6611Chr01:22414601..22414625 (25 bp)
GTTGGATCGATTGACAGCTCTTGAG
LOC_Os01g39260
Os.19618.1.S1_at--581--1851Chr01:22414630..22414654 (25 bp)
ACGAAGAGTTTGCTAATGCTGCTGC
LOC_Os01g39260
Os.19618.1.S1_at--232--4771Chr01:22414647..22414671 (25 bp)
GCTGCTGCAGTCATCAATAGAACAT
LOC_Os01g39260
Os.19618.1.S1_at--571--6791Chr01:22414690..22414714 (25 bp)
GTTATTTCGTTTCATGTTCCTCAAG
LOC_Os01g39260
Os.19618.1.S1_at--828--9691Chr01:22414795..22414819 (25 bp)
TCACATGGCCACACACACGGAAATA
LOC_Os01g39260
Os.19618.1.S1_at--1088--10371Chr01:22414838..22414862 (25 bp)
TTTTCAGCTACCTTAGACGTTGGAT
LOC_Os01g39260
Os.19618.1.S1_at--407--1591Chr01:22414906..22414930 (25 bp)
AGCTCCAGAGTCCATTTCTTTAGCC
LOC_Os01g39260
Os.19618.1.S1_at--131--6351Chr01:22414935..22414959 (25 bp)
GATGCTCCCTTGTTGTACTGTATGT
LOC_Os01g39260
Os.19618.1.S1_at--244--3691Chr01:22414992..22415016 (25 bp)
CTTTGCTGAATTGCCGTGTAATGAC
LOC_Os01g39260
Os.19618.1.S1_at--196--9911Chr01:22415039..22415063 (25 bp)
TACTCGCCAATTGCAGGTATTCTGT
LOC_Os01g39260
Target Sequence 
GCCGGTATCGGATCTTAGCAGTCACCAAATGATGTTGGATCGATTGACAGCTCTTGAGGATCACGAAGAGTTTGCTAATG
CTGCTGCAGTCATCAATAGAACATATTGATTGTGTGTAAGCTGTTATTTCGTTTCATGTTCCTCAAGTGTGTGGTAAGAA
AACATAAGAGAAATCATAACATTGTAGAAGGCACATTTAGACTNTGCTTGATATGTGAATTTTTGTNTCACATGGCCACA
CACACGGAAATACTGTTTACATCCTAATAATTTTCAGCTACCTTAGACGTTGGATGGTTATACCTAACAGAGAACCTGTT
GTATTTGTCTAGAATGNNAGCTCCAGAGTCCATTTCTTTAGCCCTGTGATGCTCCCTTGTTGTACTGTATGTTCTGCAAG
TTGACAAAAGAAGTTTTTNTNTNTCTTTGCTGAATTGCCGTGTAATGACAAACAGTAATGTTGGGGCCAGATACTCGCCA
ATTGCAGGTATTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis