Browse Element(s) Details


Os.19619.1.S1_at

Description gb:AK101867.1
DB_XREF= gi:32987076
TID=Os.19619.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19619 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070D21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070D21, full insert sequence.
FL= gb:AK101867.1 gb:AK069272.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3718011/11ABC1 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37120NANA7+22240025..22241838retrotransposon protein, putative, LINE subclass
LOC_Os07g37130Os.52135.1.S1_at11/117+22242231..22244796equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37140Os.9008.1.S1_at11/117+22245963..22251138expressed protein
LOC_Os07g37150OsAffx.28791.2.A1_s_at11/117+22252083..22255035expressed protein
LOC_Os07g37150OsAffx.28791.2.A1_at10/117+22252083..22255035expressed protein
LOC_Os07g37150OsAffx.7080.1.S1_x_at1/117+22252083..22255035expressed protein
LOC_Os07g37164NANA7+22262954..22263845NA
LOC_Os07g37180Os.19619.1.S1_at11/117+22266055..22271922ABC1 family protein, putative, expressed
LOC_Os07g37190NANA7+22279482..22282709transposon protein, putative, unclassified
LOC_Os07g37200NANA7+22283352..22289507transposon protein, putative, unclassified
LOC_Os07g37210Os.3390.1.S1_at7/117+22292042..22293615Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g37210Os.57514.1.S1_x_at1/117+22292042..22293615Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19619.1.S1_at--1061--5211Chr07:22266574..22266598 (25 bp)
GAATTTTACTTCCTGCTATGCTGCT
LOC_Os07g37180
Os.19619.1.S1_at--961--10131Chr07:22266558..22266582 (25 bp)
TATGCTGCTGCAATCTTGATGTGAA
LOC_Os07g37180
Os.19619.1.S1_at--140--6271Chr07:22266541..22266565 (25 bp)
GATGTGAATCAACTTCTGCGAGTGA
LOC_Os07g37180
Os.19619.1.S1_at--896--6631Chr07:22266478..22266502 (25 bp)
GTTGTTAAACTCTCTGCAGGGCTGA
LOC_Os07g37180
Os.19619.1.S1_at--800--951Chr07:22266433..22266457 (25 bp)
AGGACGGTGTCCTTTCGGGCTTCAG
LOC_Os07g37180
Os.19619.1.S1_at--1078--3251Chr07:22266331..22266355 (25 bp)
CAAAAGGTCTGTGTCCTGTAGGATT
LOC_Os07g37180
Os.19619.1.S1_at--896--6551Chr07:22266310..22266334 (25 bp)
GATTAGCAGGATCCACTACACCGCA
LOC_Os07g37180
Os.19619.1.S1_at--265--9851Chr07:22266294..22266318 (25 bp)
TACACCGCAGGTTGAGTCAGTCCAG
LOC_Os07g37180
Os.19619.1.S1_at--231--7951Chr07:22266259..22266283 (25 bp)
GGATATCATCGACTCAGGCTTTGGT
LOC_Os07g37180
Os.19619.1.S1_at--1123--3891Chr07:22266216..22266240 (25 bp)
CTGGTATTTGCCGAGCTGATTAAAA
LOC_Os07g37180
Os.19619.1.S1_at--462--1171Chr07:22266192..22266216 (25 bp)
AGTAGGCCAGCCTTTCAGTTTAGGT
LOC_Os07g37180
Target Sequence 
GAATTTTACTTCCTGCTATGCTGCTGCAATCTTGATGTGAATCAACTTCTGCGAGTGATGATAGACATTTATAAATGGCG
TATCATTATATTAGCCGTTGTTAAACTCTCTGCAGGGCTGAATGATTGGGCTGGAGGACCGAGGACGGTGTCCTTTCGGG
CTTCAGCTTCAGCTCTCTTTCCATGGTTCACCTGTGCTTTCGCTGCGGCTGCCGGAGGACGAAGAAGTGAGAAAAGGTGC
CCCCAAAAGGTCTGTGTCCTGTAGGATTAGCAGGATCCACTACACCGCAGGTTGAGTCAGTCCAGTGAGGATTGAGGATA
TCATCGACTCAGGCTTTGGTCGCCGGCGGCCGGGAAAGCTGGTATTTGCCGAGCTGATTAAAAGTAGGCCAGCCTTTCAG
TTTAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis