Browse Element(s) Details


Os.9008.1.S1_at

Description gb:AK101830.1
DB_XREF= gi:32987039
TID=Os.9008.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068I24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068I24, full insert sequence.
FL= gb:AK101830.1 gb:AK067121.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3714011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37090Os.22408.1.S1_at11/117+22220606..22221642Ribosome inactivating protein, expressed
LOC_Os07g37100Os.8375.1.S1_at11/117+22229333..22232900equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37110Os.53971.1.S1_at11/117+22235127..22238625equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37120NANA7+22240025..22241838retrotransposon protein, putative, LINE subclass
LOC_Os07g37130Os.52135.1.S1_at11/117+22242231..22244796equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37140Os.9008.1.S1_at11/117+22245963..22251138expressed protein
LOC_Os07g37150OsAffx.28791.2.A1_s_at11/117+22252083..22255035expressed protein
LOC_Os07g37150OsAffx.28791.2.A1_at10/117+22252083..22255035expressed protein
LOC_Os07g37150OsAffx.7080.1.S1_x_at1/117+22252083..22255035expressed protein
LOC_Os07g37164NANA7+22262954..22263845NA
LOC_Os07g37180Os.19619.1.S1_at11/117+22266055..22271922ABC1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9008.1.S1_at--634--6231Chr07:22250558..22250582 (25 bp)
GATGGCAGCATTAGTTGCCCTTCCA
LOC_Os07g37140
Os.9008.1.S1_at--1083--1171Chr07:22250586..22250610 (25 bp)
AGTTAGGTGGTTGTGGCGACTCCTT
LOC_Os07g37140
Os.9008.1.S1_at--659--5711Chr07:22250603..22250627 (25 bp)
GACTCCTTGCTAAACCTGGTGTATG
LOC_Os07g37140
Os.9008.1.S1_at--107--1871Chr07:22250667..22250691 (25 bp)
ACGAGCTAGATGGTCCGGGCAATCA
LOC_Os07g37140
Os.9008.1.S1_at--485--5651Chr07:22250735..22250759 (25 bp)
GACAGATTATCCGTTGGCCAGCAGG
LOC_Os07g37140
Os.9008.1.S1_at--910--10291Chr07:22250766..22250790 (25 bp)
TTTCCTCATAACTACAACTGCCGAT
LOC_Os07g37140
Os.9008.1.S1_at--321--6271Chr07:22250797..22250821 (25 bp)
GATGTCCCTTTCATCTTTGAGGTGA
LOC_Os07g37140
Os.9008.1.S1_at--816--10451Chr07:22250938..22250962 (25 bp)
TTAGCGTGATTATCGGCCCATATCG
LOC_Os07g37140
Os.9008.1.S1_at--1126--7171Chr07:22250977..22251001 (25 bp)
GTCTGTGACCTGTGGATATTCTCCG
LOC_Os07g37140
Os.9008.1.S1_at--246--3511Chr07:22251040..22251064 (25 bp)
CATGGTGTACATAGGCCTAGGTCTT
LOC_Os07g37140
Os.9008.1.S1_at--421--2271Chr07:22251085..22251109 (25 bp)
AAATCTGGTTGGAGCTTGCATTGGC
LOC_Os07g37140
Target Sequence 
GATGGCAGCATTAGTTGCCCTTCCATCGAGTTAGGTGGTTGTGGCGACTCCTTGCTAAACCTGGTGTATGTGCCCCCATC
TGACCAATCTGAAGAAGTCAGTTCAGGAGACGAGCTAGATGGTCCGGGCAATCATTCTGGAGTTAAAGATGCTGTTGCTG
AGAGTAATGGAGGCCCTGACAGATTATCCGTTGGCCAGCAGGAGACCGTTTCCTCATAACTACAACTGCCGATGTTGCTG
ATGTCCCTTTCATCTTTGAGGTGAGTGTGAGAGTGTCATAACTGTGGAGACGCTGAGAGTAATGAGCATGGAATGTTCAT
TCTAAGGGCTGGAAAGGTGAGGGGTGTGCTCCGGATTCGTTAGACGGTAGATTGCCTGATTTAGCGTGATTATCGGCCCA
TATCGGCCATTGATTTTAGGTCTGTGACCTGTGGATATTCTCCGAGTAATTTTTTCCGTACCTGTTAAATCCTTGGTTTG
GACATGGTGTACATAGGCCTAGGTCTTTGTTTACCCCTCCTTAGTTAAAATCTGGTTGGAGCTTGCATTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis