Browse Element(s) Details


Os.53971.1.S1_at

Description gb:AK101098.1
DB_XREF= gi:32986307
TID=Os.53971.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024P16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024P16, full insert sequence.
FL= gb:AK101098.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3711011/11equilibrative nucleoside transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37080OsAffx.16592.1.S1_at11/117+22209596..22211455F-box domain containing protein
LOC_Os07g37090Os.22408.1.S1_at11/117+22220606..22221642Ribosome inactivating protein, expressed
LOC_Os07g37100Os.8375.1.S1_at11/117+22229333..22232900equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37110Os.53971.1.S1_at11/117+22235127..22238625equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37120NANA7+22240025..22241838retrotransposon protein, putative, LINE subclass
LOC_Os07g37130Os.52135.1.S1_at11/117+22242231..22244796equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37140Os.9008.1.S1_at11/117+22245963..22251138expressed protein
LOC_Os07g37150OsAffx.28791.2.A1_s_at11/117+22252083..22255035expressed protein
LOC_Os07g37150OsAffx.28791.2.A1_at10/117+22252083..22255035expressed protein
LOC_Os07g37150OsAffx.7080.1.S1_x_at1/117+22252083..22255035expressed protein
LOC_Os07g37164NANA7+22262954..22263845NA

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Gene Ontology Classification
GO idTypeName
GO:0005337molecular_functionnucleoside transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53971.1.S1_at--650--6911Chr07:22235825..22235849 (25 bp)
GTATGCACTTGTCTTGATCGCGAGC
LOC_Os07g37110
Os.53971.1.S1_at--1023--2831Chr07:22235754..22235778 (25 bp)
AAGTCAAGCTAAGGTCCCGCAAGGT
LOC_Os07g37110
Os.53971.1.S1_at--899--2891Chr07:22235734..22235758 (25 bp)
AAGGTGATACTGATCGCCGTCGTCT
LOC_Os07g37110
Os.53971.1.S1_at--698--91Chr07:22235695..22235719 (25 bp)
ATTCCTGCATTCTACTACACTGCAA
LOC_Os07g37110
Os.53971.1.S1_at--320--7311Chr07:22235410..22235434 (25 bp)
GTGCTTTCCCTGTTGGGAGGCATAT
LOC_Os07g37110
Os.53971.1.S1_at--984--111Chr07:22235374..22235398 (25 bp)
ATTCTTGATTGGCTCTGGTTGATAG
LOC_Os07g37110
Os.53971.1.S1_at--282--7771Chr07:22235340..22235364 (25 bp)
GGTGACCATTGATCGACTTGTGTAA
LOC_Os07g37110
Os.53971.1.S1_at--558--10391Chr07:22235301..22235325 (25 bp)
TTTTGTGCGAGTGTATGGGACCCTG
LOC_Os07g37110
Os.53971.1.S1_at--192--8451Chr07:22235286..22235310 (25 bp)
TGGGACCCTGGATGCAATTAAGCTC
LOC_Os07g37110
Os.53971.1.S1_at--459--4931Chr07:22235253..22235277 (25 bp)
GCTTGAACAGTCTCTTCTGCTGAAA
LOC_Os07g37110
Os.53971.1.S1_at--621--6671Chr07:22235131..22235155 (25 bp)
GTTGCATTACATGTCTTTTTCCCAT
LOC_Os07g37110
Target Sequence 
GTATGCACTTGTCTTGATCGCGAGCTATAACGTATGGGATCTGATCGGAAGATACATACCTCTGATTGAACAAGTCAAGC
TAAGGTCCCGCAAGGTGATACTGATCGCCGTCGTCTCGCGGTTCTTGCTCATTCCTGCATTCTACTACACTGCAAAGTAC
AGTGACCAGGGCTGGATGATCATGCTAACGTCGTTTCTCGGTTTGAGCAACGGATATCTCACCGTCTGCATCCTCACCGA
AGCACCCAAAGGGTACAAGGGACCAGAACAAAATGCTTTGGGCAACTTGCTTGTGCTTTCCCTGTTGGGAGGCATATTTT
GCGGGGCCATTCTTGATTGGCTCTGGTTGATAGGTAAAGGGTGGTGACCATTGATCGACTTGTGTAACATATTCTTCAAT
GTTTTGTGCGAGTGTATGGGACCCTGGATGCAATTAAGCTCCAGTCACAGCTTGAACAGTCTCTTCTGCTGAAAATTAAA
CCTGCAAATGTATCGAAATGGTGAGGAGGAAAGCGAGGAAGAACATATGTAAAGGCATATTTTTGAGATGTAAAATATTA
TGTCTTGCATAGTTGCATTACATGTCTTTTTCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis