Browse Element(s) Details


Os.19639.1.S1_at

Description gb:AB071330.1
DB_XREF= gi:19352100
GEN=qSH-1
TID=Os.19639.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19639 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) mRNA for qSH-1, complete cds.
PROD=qSH-1
FL= gb:AB071330.1 gb:AK060936.1 gb:AB071331.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6292011/11homeodomain protein JUBEL2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62890Os.49468.2.S1_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890OsAffx.21738.1.S1_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890Os.49468.2.S1_x_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890OsAffx.21738.1.S1_x_at10/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62900Os.33244.1.S2_at11/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62900Os.33244.1.S1_at11/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62900Os.10728.1.S1_at1/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62910Os.42431.1.S1_at11/111+36765797..36769793pentatricopeptide, putative, expressed
LOC_Os01g62920Os.19639.1.S1_at11/111+36772211..36776800homeodomain protein JUBEL2, putative, expressed
LOC_Os01g62920Os.42388.1.S1_x_at1/111+36772211..36776800homeodomain protein JUBEL2, putative, expressed
LOC_Os01g62950Os.34462.1.S1_at11/111+36794768..36797290Ras-related protein Rab11C, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010154biological_processfruit development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19639.1.S1_at--65--8131Chr01:36772849..36772873 (25 bp)
GGACTCCCATCCTGGACAGAGCAGC
LOC_Os01g62920
Os.19639.1.S1_at--796--3531Chr01:36772753..36772777 (25 bp)
CATCCAGGGACAGGTGAGCTTCGCA
LOC_Os01g62920
Os.19639.1.S1_at--391--5131Chr01:36772708..36772732 (25 bp)
GCACAACATTGCATCACCACATCAT
LOC_Os01g62920
Os.19639.1.S1_at--607--7811Chr01:36772620..36772644 (25 bp)
GGTCTTCACCAGAACAACAGGGTCT
LOC_Os01g62920
Os.19639.1.S1_at--570--1751Chr01:36772559..36772583 (25 bp)
ACCTAGCTCACCGTTTCGGACTGGA
LOC_Os01g62920
Os.19639.1.S1_at--42--3471Chr01:36772528..36772552 (25 bp)
CAGTGACGCCTATGTGATGAGCTCA
LOC_Os01g62920
Os.19639.1.S1_at--869--31Chr01:36772470..36772494 (25 bp)
ATTGGTGGTCACTTGCTGCATGATT
LOC_Os01g62920
Os.19639.1.S1_at--1128--151Chr01:36772448..36772472 (25 bp)
ATTTTGTCGGGTGATTGTGGCTGCT
LOC_Os01g62920
Os.19639.1.S1_at--369--4451Chr01:36772423..36772447 (25 bp)
GCCTCAGGTTGCTGGTGATGCACTT
LOC_Os01g62920
Os.19639.1.S1_at--307--6331Chr01:36772407..36772431 (25 bp)
GATGCACTTGTAATGTACTGCTAGT
LOC_Os01g62920
Os.19639.1.S1_at--505--3191Chr01:36772358..36772382 (25 bp)
CAATCACTTGGCGACATGGCTTGAT
LOC_Os01g62920
Target Sequence 
GGACTCCCATCCTGGACAGAGCAGCAGCATAACNCGGAACCACAACACCGCTGCCTCCCAGGGCTTCCCGGATGAGCTCT
CCCAGATGTCCCAGTCCATCCAGGGACAGGTGAGCTTCGCATACAACGGGCTGACCTCGCAGCACAACATTGCATCACCA
CATCATCAGCACCAGCAGGTCGGCGGTGTTGGTATCGGAGGCGGCAATGGCGGTGTCTCCCTCACCCTTGGTCTTCACCA
GAACAACAGGGTCTGCATCGCCGAGCCTCTCCCGGCTGCTCTCCCGGCCAACCTAGCTCACCGTTTCGGACTGGAGGAAG
TCAGTGACGCCTATGTGATGAGCTCATTTGGAGGTCAGGACCGGCATTTCGGGAAGGAGATTGGTGGTCACTTGCTGCAT
GATTTTGTCGGGTGATTGTGGCTGCTGCCTCAGGTTGCTGGTGATGCACTTGTAATGTACTGCTAGTATGATGTTAGGAT
GGTATATAAGTCAATCACTTGGCGACATGGCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis