Browse Element(s) Details


Os.19777.1.A1_at

Description gb:BX900663
DB_XREF= gi:40493232
DB_XREF=BX900663
CLONE=y738d03p5
TID=Os.19777.1
CNT=70
FEA=FLmRNA
TIER=Stack
STK=20
UG=Os.19777 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative triose phosphatephosphate translocator (OSJNBa0086P08.23), mRNA
FL= gb:AK099799.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1377011/11Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13740Os.1229.2.S1_x_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.2.S1_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.1.S1_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.3.S1_x_at10/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.1.S1_a_at8/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13760Os.1233.1.S1_at11/111+7709161..7714533DnaJ domain containing protein, expressed
LOC_Os01g13770Os.19777.1.A1_at11/111+7714993..7719253Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os01g13780Os.52620.1.S1_at11/111+7721116..7722334expressed protein
LOC_Os01g13800Os.17143.1.S1_at11/111+7735876..7739680Receptor-like protein kinase 5 precursor, putative, expressed
LOC_Os01g13810OsAffx.25616.2.S1_x_at11/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.3.S1_at11/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.5.S1_x_at10/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.2.S1_at8/111+7741045..7744548expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015712biological_processhexose phosphate transport
GO:0015717biological_processtriose phosphate transport
GO:0009670molecular_functiontriose-phosphate transporter activity
GO:0015152molecular_functionglucose-6-phosphate transporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19777.1.A1_at--573--4911Chr01:7716545..7716569 (25 bp)
GCTTGACAAAGTTCGTTTCTGACCT
LOC_Os01g13770
Os.19777.1.A1_at--785--7631Chr01:7716511..7716535 (25 bp)
GGGACTGTTCTACCACCTCTATAAC
LOC_Os01g13770
Os.19777.1.A1_at--681--7911Chr01:7716327..7716351 (25 bp)
GGTTGCTACAAACACTCTGGAGCGA
LOC_Os01g13770
Os.19777.1.A1_at--318--9492Chr10:281541..282027 (25 bp)
TCTCCATCATTGTTTTTGGCAACAG
NONE
Os.19777.1.A1_at--1030--3551Chr01:7716062..7716086 (25 bp)
CATAGCTGGTGTTGCCATCTACTCG
LOC_Os01g13770
Os.19777.1.A1_at--999--9131Chr01:7715334..7715358 (25 bp)
TGCGGTGCGTGCGTTAGTTTTACTC
LOC_Os01g13770
Os.19777.1.A1_at--482--6511Chr01:7715318..7715342 (25 bp)
GTTTTACTCGCCTCAGGGACAACAT
LOC_Os01g13770
Os.19777.1.A1_at--705--7571Chr01:7715293..7715317 (25 bp)
GGGCGAGGATCATGGCGTCTTCTTC
LOC_Os01g13770
Os.19777.1.A1_at--865--3651Chr01:7715275..7715299 (25 bp)
CTTCTTCTTGCGTATCTTGTTTTTG
LOC_Os01g13770
Os.19777.1.A1_at--638--6591Chr01:7715169..7715193 (25 bp)
GATTGTCGAGAGAGCCCAAATGTGT
LOC_Os01g13770
Os.19777.1.A1_at--1100--2251Chr01:7715142..7715166 (25 bp)
AAATAAACGCTCATACTTGGAAAAG
LOC_Os01g13770
Target Sequence 
GCTTGACAAAGTTCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGGTTGCTACAAACACTCTG
GAGCGAGTGGCCCCTCTGACGCATGCCGTTGGCAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTT
TGGCAACAGAATTACCACACAGACTGGAATTGGTACTTGCATTGCCATAGCTGGTGTTGCCATCTACTCGTACATCAAGG
CTAAGATCGAAGAGGAGAAAAGGGCGAAGAGTGCATGATGAGGTGGTTTCTGTGAATATGGCAAGGTGGCTGCGGTGCGT
GCGTTAGTTTTACTCGCCTCAGGGACAACATGGGCGAGGATCATGGCGTCTTCTTCTTGCGTATCTTGTTTTTGCTTTTG
GGGTTATTTGGTCAAATTGTTCCTAGTCTGGTGTTGAACAGCATATTGCGGTGGTAAGATTGGTTATCATCAGTTGATTG
TCGAGAGAGCCCAAATGTGTAGAAATAAACGCTCATACTTGGAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19777.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis