Browse Element(s) Details


Os.19843.1.S1_at

Description gb:AK058570.1
DB_XREF= gi:32968588
TID=Os.19843.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19843 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0503C12.19 (P0503C12.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-E07, full insert sequence.
FL= gb:AK058570.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5510011/11TCP1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55090NANA1+31999045..32003204transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g55100Os.19843.1.S1_at11/111+32026298..32028134TCP1 protein, putative, expressed
LOC_Os01g55110Os.30433.1.S1_at11/111+32037484..32038749Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g55120OsAffx.23797.1.S1_at11/111+32044890..32046656hypothetical protein
LOC_Os01g55130NANA1+32049066..32049407hypothetical protein
LOC_Os01g55140OsAffx.2336.2.S1_at10/111+32051125..32052091hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0048366biological_processleaf development
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19843.1.S1_at--261--7231Chr01:32027689..32027713 (25 bp)
GTCGACAATGGCTGCCGGACAGGTC
LOC_Os01g55100
Os.19843.1.S1_at--190--3491Chr01:32027868..32027892 (25 bp)
CAGGAGGTGTGTGCTTTCTATTAAT
LOC_Os01g55100
Os.19843.1.S1_at--598--2471Chr01:32027894..32027918 (25 bp)
AACACACTTCACTGATCTGCTTAAG
LOC_Os01g55100
Os.19843.1.S1_at--385--431Chr01:32027908..32027932 (25 bp)
ATCTGCTTAAGGGTACGTGTATGTC
LOC_Os01g55100
Os.19843.1.S1_at--297--8491Chr01:32027949..32027973 (25 bp)
TGGCTGATGAAATTTCCCTCATTAT
LOC_Os01g55100
Os.19843.1.S1_at--371--4191Chr01:32027964..32027988 (25 bp)
CCCTCATTATTATCTGCTGTCTTCA
LOC_Os01g55100
Os.19843.1.S1_at--691--4731Chr01:32027979..32028003 (25 bp)
GCTGTCTTCATGCATGTGTAACCAA
LOC_Os01g55100
Os.19843.1.S1_at--853--6691Chr01:32028028..32028052 (25 bp)
GTTCCCTTGGAACTAGGCAGCTGTT
LOC_Os01g55100
Os.19843.1.S1_at--793--3871Chr01:32028048..32028072 (25 bp)
CTGTTGCTGTTGCATTAGTTGCTAT
LOC_Os01g55100
Os.19843.1.S1_at--426--10731Chr01:32028066..32028090 (25 bp)
TTGCTATTGCTGTTTTCCCCTTTAT
LOC_Os01g55100
Os.19843.1.S1_at--959--9291Chr01:32028081..32028105 (25 bp)
TCCCCTTTATTCTCGGCATGGACAA
LOC_Os01g55100
Target Sequence 
GTCGACAATGGCTGCCGGACAGGTCGGCTTCGGCCATCTCGTTGGCGGCGCCGGTGGCGGCGGCGGGTTTATGGGGTTTC
TCGCGCCGGCGGCGCAGCGGCTTGAGGGCGAGGAGGAGCACGGAAGTGAGGTGATCAGGTGATGAGAAGAGACTGAAGAA
TTGATGCATGGCGCGCATGCAGGAGGTGTGTGCTTTCTATTAATTAACACACTTCACTGATCTGCTTAAGGGTACGTGTA
TGTCATTTCATGTAGGATTTTGGCTGATGAAATTTCCCTCATTATTATCTGCTGTCTTCATGCATGTGTAACCAAGGCTT
AATTAATTATTAAGAGTACGTTCCCTTGGAACTAGGCAGCTGTTGCTGTTGCATTAGTTGCTATTGCTGTTTTCCCCTTT
ATTCTCGGCATGGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis