Browse Element(s) Details


Os.19978.1.S1_at

Description gb:AK101714.1
DB_XREF= gi:32986923
TID=Os.19978.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19978 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033060N20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060N20, full insert sequence.
FL= gb:AK101714.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3558011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35550NANA7+21269020..21269436transposon protein, putative, unclassified
LOC_Os07g35560Os.27755.1.S1_at11/117+21278612..21280941Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35570OsAffx.28764.1.S1_at11/117+21291434..21292444MBOAT family protein, expressed
LOC_Os07g35580Os.19978.1.S1_at11/117+21293506..21297882Protein kinase domain containing protein, expressed
LOC_Os07g35600Os.54578.1.S1_at11/117+21297939..21309645expressed protein
LOC_Os07g35600OsAffx.28765.1.S1_at1/117+21297939..21309645expressed protein
LOC_Os07g35610OsAffx.16571.1.S1_at10/117+21313950..21318698Kelch motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19978.1.S1_at--64--8111Chr07:21294053..21294077 (25 bp)
GGACCGGTCCATGGGCGAGCGCGCG
LOC_Os07g35580
Os.19978.1.S1_at--869--1611Chr07:21293926..21293950 (25 bp)
AGCGGCACGGTGTCGCTCAAGGCAC
LOC_Os07g35580
Os.19978.1.S1_at--59--4271Chr07:21293893..21293917 (25 bp)
CCGGCGTTCTACATCCGGAAGGGCG
LOC_Os07g35580
Os.19978.1.S1_at--1000--9371Chr07:21293830..21293854 (25 bp)
TCGTTCGTCGGCACCTTGCCGTCGT
LOC_Os07g35580
Os.19978.1.S1_at--642--9411Chr07:21293809..21293833 (25 bp)
TCGTCCGGCAGGTCGGCGCCCATGT
LOC_Os07g35580
Os.19978.1.S1_at--293--771Chr07:21293788..21293812 (25 bp)
ATGTCGCCCAACGAGGTGTCCATCA
LOC_Os07g35580
Os.19978.1.S1_at--913--1571Chr07:21293760..21293784 (25 bp)
AGCTCGAGCCGAGATAAGGAAGAAA
LOC_Os07g35580
Os.19978.1.S1_at--601--1491Chr07:21293582..21293606 (25 bp)
AGCACTTTAGTGTTGTCTTTTAACT
LOC_Os07g35580
Os.19978.1.S1_at--505--6631Chr07:21293571..21293595 (25 bp)
GTTGTCTTTTAACTCTTATGGCGAA
LOC_Os07g35580
Os.19978.1.S1_at--325--9551Chr07:21293558..21293582 (25 bp)
TCTTATGGCGAATTATGCTGAGATA
LOC_Os07g35580
Os.19978.1.S1_at--887--2191Chr07:21293508..21293532 (25 bp)
ACAAATATATTACCCTCGTTTCATA
LOC_Os07g35580
Target Sequence 
GGACCGGTCCATGGGCGAGCGCGCGGCGGGCGGCGAGATCGCNGAGGTGCATCCACGTCGGGCTGCTCTGCGTGCAGGAG
AACCCGGCGAGCAGGCCGGCCATGNTCGNCGGTGAACGTGATGCTGAGCAGCGGCACGGTGTCGCTCAAGGCACCGTCCA
GNCCGGCGTTCTACATCCGGAAGGGCGGCGGCGACGACGGCGGCGGCNACNGGGGTCGTACTCGGGGNTCGTTCGTCGGC
ACCTTGCCGTCGTCCGGCAGGTCGGCGCCCATGTCGCCCAACGAGGTGTCCATCACNTGAGCTCGAGCCGAGATAAGGAA
GAAAAANTGTAGCAGAGCCATGTCATGTCACANGGAGTGAAGGGCTCCGGGGATGCCTAATTTGTGATTTTGTGTNCNTG
TGATGGTGTCCTCAAGATGCTACNATGTATAGAAACAGGCANGTAATCGTTGGCNANAGAACAAANTGCCANCAAAACAG
TATAGCACTTTAGTGTTGTCTTTTAACTCTTATGGCGAATTATGCTGAGATAATTGCATGATTTGCAGGTNTNTCNNTTA
CAAATATATTACCCTCGTTTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis