Browse Element(s) Details


OsAffx.16571.1.S1_at

Description tigr:9635.m03519
TID=OsAffx.16571.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Kelch motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3561010/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35570OsAffx.28764.1.S1_at11/117+21291434..21292444MBOAT family protein, expressed
LOC_Os07g35580Os.19978.1.S1_at11/117+21293506..21297882Protein kinase domain containing protein, expressed
LOC_Os07g35600Os.54578.1.S1_at11/117+21297939..21309645expressed protein
LOC_Os07g35600OsAffx.28765.1.S1_at1/117+21297939..21309645expressed protein
LOC_Os07g35610OsAffx.16571.1.S1_at10/117+21313950..21318698Kelch motif family protein, expressed
LOC_Os07g35620OsAffx.16572.3.S1_at11/117+21324007..21324669expressed protein
LOC_Os07g35630OsAffx.2182.1.S1_at1/117+21331886..21335913retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g35630OsAffx.828.1.S1_x_at1/117+21331886..21335913retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16571.1.S1_at--1044--6111Chr07:21315972..21315996 (25 bp)
GAGTGTTTCTCTGACGTTGAAGTAT
LOC_Os07g35610
OsAffx.16571.1.S1_at--748--7951Chr07:21315546..21315928 (25 bp)
GGATAAGCGCTTTGCTCTAGCAGGC
LOC_Os07g35610
OsAffx.16571.1.S1_at--503--7751Chr07:21315218..21315503 (25 bp)
GGTGTTCAATATCTTAGCTCTGCTG
LOC_Os07g35610
OsAffx.16571.1.S1_at--726--4811Chr07:21315202..21315226 (25 bp)
GCTCTGCTGAGAGACTTGATCCTCG
LOC_Os07g35610
OsAffx.16571.1.S1_at--531--8851Chr07:21315186..21315210 (25 bp)
TGATCCTCGGGAGCCTAGCTGGAAA
LOC_Os07g35610
OsAffx.16571.1.S1_at--614--4671Chr07:21314864..21314888 (25 bp)
GCGGTTATGACGCTGAGGCTAAAAC
LOC_Os07g35610
OsAffx.16571.1.S1_at--165--3211Chr07:21314840..21314864 (25 bp)
CAATGGTGGCTACTGTCGAGTTGTA
LOC_Os07g35610
OsAffx.16571.1.S1_at--554--7711Chr07:21314795..21314819 (25 bp)
GGGTGATGGCTGAACCCATGAACTA
LOC_Os07g35610
OsAffx.16571.1.S1_at--76--6171Chr07:21314765..21314789 (25 bp)
GAGGATATCATTCTTCAGCTGTACT
LOC_Os07g35610
OsAffx.16571.1.S1_at--777--1611Chr07:21314749..21314773 (25 bp)
AGCTGTACTTGGTGGCTCGATCTTC
LOC_Os07g35610
OsAffx.16571.1.S1_at--884--7171Chr07:21313812..21313832 (21 bp)
GTCGAGTTCAGTTTTTTCCTACCTG
NONE
Target Sequence 
GAGTGTTTCTCTGACGTTGAAGTATTTGATCCTGCTTATGGAAAGTGGATTAAAAATCAGTCTATGCTGGATAAGCGCTT
TGCTCTAGCAGGCGTGGAACTTAACGGTGCAATTTATGCAGTTGGAGGCTTCAACGGTGTTCAATATCTTAGCTCTGCTG
AGAGACTTGATCCTCGGGAGCCTAGCTGGAAAAGACTCCCAAAGTTGAGTACAGGAAAAGGTTGTCATACACTGGCAGTG
CTTGATGACAAGATATTCTCAATTGGCGGTTATGACGCTGAGGCTAAAACAATGGTGGCTACTGTCGAGTTGTATGAGCC
AAGGATGCCATCATGGGTGATGGCTGAACCCATGAACTACAACAGAGGATATCATTCTTCAGCTGTACTTGGTGGCTCGA
TCTTCGCTTTTGGTGGGGTGAAAGGTGAAGGAGATGCAATCTTGGATGTGGTGGAACGCTACAAGGAAGGGTGTGGTTGG
GTGACTACCGAGTCGAGTTCAGTTTTTTCCTACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis