Browse Element(s) Details


OsAffx.16572.3.S1_at

Description tigr:9635.m03520
TID=OsAffx.16572.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3562011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35600Os.54578.1.S1_at11/117+21297939..21309645expressed protein
LOC_Os07g35600OsAffx.28765.1.S1_at1/117+21297939..21309645expressed protein
LOC_Os07g35610OsAffx.16571.1.S1_at10/117+21313950..21318698Kelch motif family protein, expressed
LOC_Os07g35620OsAffx.16572.3.S1_at11/117+21324007..21324669expressed protein
LOC_Os07g35630OsAffx.2182.1.S1_at1/117+21331886..21335913retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g35630OsAffx.828.1.S1_x_at1/117+21331886..21335913retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g35640OsAffx.5536.1.S1_at11/117+21344090..21345214hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16572.3.S1_at--339--9951Chr07:21324130..21324154 (25 bp)
TACCGCAGCTCCTCCCGTATTATTT
LOC_Os07g35620
OsAffx.16572.3.S1_at--752--1591Chr07:21324124..21324148 (25 bp)
AGCTCCTCCCGTATTATTTTCCAGA
LOC_Os07g35620
OsAffx.16572.3.S1_at--670--9311Chr07:21324118..21324142 (25 bp)
TCCCGTATTATTTTCCAGAGGAAGA
LOC_Os07g35620
OsAffx.16572.3.S1_at--433--1232Chr07:21324096..21324120 (25 bp)
AGATTAGTTGGTGTTTGCTGTTTCC
LOC_Os07g35620
OsAffx.16572.3.S1_at--301--6632Chr07:21324090..21324114 (25 bp)
GTTGGTGTTTGCTGTTTCCATTTGA
LOC_Os07g35620
OsAffx.16572.3.S1_at--716--7432Chr07:21324086..21324110 (25 bp)
GTGTTTGCTGTTTCCATTTGATTGA
LOC_Os07g35620
OsAffx.16572.3.S1_at--212--8831Chr07:21324068..21324092 (25 bp)
TGATTGATTGGCTTGCATTGTTCCA
LOC_Os07g35620
OsAffx.16572.3.S1_at--620--6611Chr07:21324063..21324087 (25 bp)
GATTGGCTTGCATTGTTCCAAGTGG
LOC_Os07g35620
OsAffx.16572.3.S1_at--155--4931Chr07:21324058..21324082 (25 bp)
GCTTGCATTGTTCCAAGTGGTTCGA
LOC_Os07g35620
OsAffx.16572.3.S1_at--828--8772Chr07:21324050..21324074 (25 bp)
TGTTCCAAGTGGTTCGATTCCTGCA
LOC_Os07g35620
OsAffx.16572.3.S1_at--494--9212Chr07:21324047..21324071 (25 bp)
TCCAAGTGGTTCGATTCCTGCACCT
LOC_Os07g35620
Target Sequence 
TACCGCAGCTCCTCCCGTATTATTTTCCAGAGGAAGATTAGTTGGTGTTTGCTGTTTCCATTTGATTGATTGGCTTGCAT
TGTTCCAAGTGGTTCGATTCCTGCACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16572.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis