Browse Element(s) Details


Os.20031.1.S1_at

Description gb:AK066346.1
DB_XREF= gi:32976364
TID=Os.20031.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0640E12.4 (P0640E12.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013061P09, full insert sequence.
FL= gb:AK066346.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2939011/11peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29360Os.18377.3.S1_x_at11/117+17228574..17243580TPR repeat nuclear phosphoprotein, putative, expressed
LOC_Os07g29360Os.18377.1.S1_a_at11/117+17228574..17243580TPR repeat nuclear phosphoprotein, putative, expressed
LOC_Os07g29370OsAffx.22325.1.S1_at10/117+17247907..17248424hypothetical protein
LOC_Os07g29380OsAffx.31578.1.S1_at10/117+17250473..17252592hypothetical protein
LOC_Os07g29380OsAffx.31578.1.S1_x_at10/117+17250473..17252592hypothetical protein
LOC_Os07g29390OsAffx.10094.1.A1_x_at11/117+17253240..17258865peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g29390Os.20031.1.S1_at11/117+17253240..17258865peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g29390OsAffx.10094.1.A1_at11/117+17253240..17258865peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g29400NANA7+17263837..17264325hypothetical protein
LOC_Os07g29410Os.12100.1.S1_at11/117+17266971..17268414thioredoxin family protein, putative, expressed
LOC_Os07g29410Os.52278.1.S1_s_at11/117+17266971..17268414thioredoxin family protein, putative, expressed
LOC_Os07g29420Os.37227.1.S1_at11/117+17269209..17272584RNA polymerase Rpb7, N-terminal domain containing protein, expressed
LOC_Os07g29430OsAffx.16475.1.S1_at11/117+17273178..17273792hypothetical protein
LOC_Os07g29440NANA7+17274496..17274990S-adenosylmethionine synthetase 1, putative
LOC_Os07g29450Os.11483.1.S1_at11/117+17275926..17281914expressed protein
LOC_Os07g29450Os.11483.2.S1_at11/117+17275926..17281914expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20031.1.S1_at--1104--5091Chr07:17254187..17254211 (25 bp)
GCACGAGGCATTCATGATCGGGACT
LOC_Os07g29390
Os.20031.1.S1_at--341--6431Chr07:17254135..17254159 (25 bp)
GATCTTTTTATCACAACTGCTCCAA
LOC_Os07g29390
Os.20031.1.S1_at--137--8291Chr07:17253613..17253637 (25 bp)
GGCATACTCAACATCACGCTAAAAC
LOC_Os07g29390
Os.20031.1.S1_at--372--6491Chr07:17253573..17253597 (25 bp)
GATAGCTTGTTGTCCTTACCTGAAA
LOC_Os07g29390
Os.20031.1.S1_at--97--10431Chr07:17253543..17253567 (25 bp)
TTATCTGTACTCCAAGAGGGTCCAT
LOC_Os07g29390
Os.20031.1.S1_at--615--531Chr07:17253516..17253540 (25 bp)
ATCGCCTCCAATTGCTGCTGAAATT
LOC_Os07g29390
Os.20031.1.S1_at--1043--3631Chr07:17253477..17253501 (25 bp)
CTTCCTCTAGAAGCCCATGGGTTGC
LOC_Os07g29390
Os.20031.1.S1_at--777--5271Chr07:17253445..17253469 (25 bp)
GAAGGCGCTTAATCTTGCCTGGCAG
LOC_Os07g29390
Os.20031.1.S1_at--100--9831Chr07:17253419..17253443 (25 bp)
TAAAAGCTTCTTCCGTCTCATGGAG
LOC_Os07g29390
Os.20031.1.S1_at--505--2251Chr07:17253383..17253407 (25 bp)
AAATTTATCCCTGGTGTCATTCGGC
LOC_Os07g29390
Os.20031.1.S1_at--438--111Chr07:17253365..17253389 (25 bp)
ATTCGGCTGTCAGTTTTTGCAGGCA
LOC_Os07g29390
Target Sequence 
GCACGAGGCATTCATGATCGGGACTACGAAGAATCCTAATAATAAAGGATTTGATCTTTTTATCACAACTGCTCCAATTC
CTGACTTGAATGACAAGCTTGTTGTATTTGGGCAAGTTATCAATGGACAAGATATTGTTCAGGAGATCGAAGAAGTTGAT
ACTGATGAGCATTACCAGCCNAAAACCCCTATCGGCATACTCAACATCACGCTAAAACAGCANAGCTTTGAGCTGATAGC
TTGTTGTCCTTACCTGAAAATGACTTATCTGTACTCCAAGAGGGTCCATACATCGCCTCCAATTGCTGCTGAAATTGATT
ATGATTATGGCTTCCTCTAGAAGCCCATGGGTTGCNAAGAAAGAAGGCGCTTAATCTTGCCTGGCAGCTAAAAGCTTCTT
CCGTCTCATGGAGTAGTTGTGTATAAATTTATCCCTGGTGTCATTCGGCTGTCAGTTTTTGCAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis