Browse Element(s) Details


Os.20156.1.S1_at

Description gb:AK062905.1
DB_XREF= gi:32972923
TID=Os.20156.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F09, full insert sequence.
FL= gb:AK062905.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g038305/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03770NANA2+1589008..1589945hypothetical protein
LOC_Os02g03780OsAffx.11881.1.S1_at11/112+1593186..1593406hypothetical protein
LOC_Os02g03790Os.39971.1.A1_at11/112+1594601..1599297expressed protein
LOC_Os02g03800OsAffx.2494.1.S1_at9/112+1600394..1601422expressed protein
LOC_Os02g03810OsAffx.24088.1.S1_at11/112+1601977..1603063F-box domain containing protein
LOC_Os02g03820Os.54258.1.S1_at11/112+1603372..1607211expressed protein
LOC_Os02g03830Os.20156.1.S1_at5/112+1611135..1611557expressed protein
LOC_Os02g03840Os.17347.1.S1_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.17347.1.S2_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.21055.1.A1_at4/112+1617326..1630163expressed protein
LOC_Os02g03850Os.49187.1.S1_at11/112+1631971..1636772Glycosyl transferase family, a/b domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20156.1.S1_at--43--391Chr02:1611401..1611425 (25 bp)
ATCACGGTGTCGCTGAAGCCGGTCA
LOC_Os02g03830
Os.20156.1.S1_at--23--5431Chr02:1611387..1611411 (25 bp)
GAAGCCGGTCAAGGTCAGCCGGCCA
LOC_Os02g03830
Os.20156.1.S1_at--1084--5711Chr02:1611185..1611209 (25 bp)
GACTCGCTGGAGTTCTTCCGCGTGC
LOC_Os02g03830
Os.20156.1.S1_at--45--6531Chr02:1611155..1611179 (25 bp)
GATTTGGAGGCCGTCTTTGCCAACC
LOC_Os02g03830
Os.20156.1.S1_at--240--4251Chr02:1611145..1611169 (25 bp)
CCGTCTTTGCCAACCGAGTTGCAAA
LOC_Os02g03830
Os.20156.1.S1_at--666--10751Chr02:1611059..1611083 (25 bp)
TTGATCCAAGTCTAGCTCTGAAGAT
NONE
Os.20156.1.S1_at--50--3191Chr02:1611029..1611053 (25 bp)
CAATTAATGGTGTGTGCATGCATGG
NONE
Os.20156.1.S1_at--408--7391Chr02:1610996..1611020 (25 bp)
GTGAGAGATCAGTGCAGCTGTAAAA
NONE
Os.20156.1.S1_at--442--2331Chr02:1610970..1610994 (25 bp)
AAAGTTTCTCTTTGTAGCACATGAT
NONE
Os.20156.1.S1_at--403--7391Chr02:1610942..1610966 (25 bp)
GTGAGTGATTTCCATATGATTCCAT
NONE
Os.20156.1.S1_at--367--4191Chr02:1610917..1610941 (25 bp)
CCCTTTTGATTGATCATTTCTTCAA
NONE
Target Sequence 
ATCACGGTGTCGCTGAAGCCGGTCAAGGTCAGCCGGCCACAGCTCGNCGNCGANGAGGAGGAGGAGGAGGTGACGACGCC
NAGAGGGGNGGAGTGCAGATTACCGGCGGAGGCGGCGACGTGCCCGCCGGCGCCCAAGAAGCCGAGGACGGCGGCGGTGG
CGATCGTCGCCGGCGGCGGCCGGCGGTGCAACTGCTGCGACGACGACGGCGGCGACTCGCTGGAGTTCTTCCGCGTGCCG
GCGGATTTGGAGGCCGTCTTTGCCAACCGAGTTGCAAAGGCAAATTAGTAGTAATTAANTTCATAGAGAGATAAATTCGT
CTTGAATTTTAAGTGTAATTTGATCCAAGTCTAGCTCTGAAGATCAGTGCAATTAATGGTGTGTGCATGCATGGGTGAGT
GAGTGAGAGATCAGTGCAGCTGTAAAAAAAAGTTTCTCTTTGTAGCACATGATAGTGTGAGTGATTTCCATATGATTCCA
TCCCTTTTGATTGATCATTTCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis