Browse Element(s) Details


Os.54258.1.S1_at

Description gb:AK102856.1
DB_XREF= gi:32988065
TID=Os.54258.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54258 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033110M10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033110M10, full insert sequence.
FL= gb:AK102856.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0382011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03760Os.17524.1.S1_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03760Os.17524.2.S1_x_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03770NANA2+1589008..1589945hypothetical protein
LOC_Os02g03780OsAffx.11881.1.S1_at11/112+1593186..1593406hypothetical protein
LOC_Os02g03790Os.39971.1.A1_at11/112+1594601..1599297expressed protein
LOC_Os02g03800OsAffx.2494.1.S1_at9/112+1600394..1601422expressed protein
LOC_Os02g03810OsAffx.24088.1.S1_at11/112+1601977..1603063F-box domain containing protein
LOC_Os02g03820Os.54258.1.S1_at11/112+1603372..1607211expressed protein
LOC_Os02g03830Os.20156.1.S1_at5/112+1611135..1611557expressed protein
LOC_Os02g03840Os.17347.1.S1_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.17347.1.S2_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.21055.1.A1_at4/112+1617326..1630163expressed protein
LOC_Os02g03850Os.49187.1.S1_at11/112+1631971..1636772Glycosyl transferase family, a/b domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54258.1.S1_at--763--5071Chr02:1606217..1606241 (25 bp)
GCAGCCCTCTGTTAAGATCTTGTAT
LOC_Os02g03820
Os.54258.1.S1_at--1024--7931Chr02:1606771..1606795 (25 bp)
GGATAATTTTCCACTTTCTTGCTCT
LOC_Os02g03820
Os.54258.1.S1_at--970--9511Chr02:1606815..1606839 (25 bp)
TCTCATCCCTAGAGCGTTGACTTGA
LOC_Os02g03820
Os.54258.1.S1_at--353--6471Chr02:1606846..1606870 (25 bp)
GATAAGCTCGGATCATGTCCTCATG
LOC_Os02g03820
Os.54258.1.S1_at--99--7371Chr02:1606910..1606934 (25 bp)
GTGAACTCATTGACCATCTCATAAG
LOC_Os02g03820
Os.54258.1.S1_at--584--31Chr02:1606948..1606972 (25 bp)
ATTGGGCTTGTCTTTTGCCGTCAAA
LOC_Os02g03820
Os.54258.1.S1_at--787--7731Chr02:1607014..1607038 (25 bp)
GGTGGATCCAGCTACCAGTGAATTC
LOC_Os02g03820
Os.54258.1.S1_at--205--5211Chr02:1607033..1607057 (25 bp)
GAATTCTGGCTCATTATGCTTTCGG
LOC_Os02g03820
Os.54258.1.S1_at--728--5671Chr02:1607108..1607132 (25 bp)
GACATCTCGCTGTATCTCTGAAGAA
LOC_Os02g03820
Os.54258.1.S1_at--1055--3131Chr02:1607131..1607155 (25 bp)
AATTAGGTGATCCTGCTTGCAGTCT
LOC_Os02g03820
Os.54258.1.S1_at--352--4931Chr02:1607145..1607169 (25 bp)
GCTTGCAGTCTGTATCCTGGTATAC
LOC_Os02g03820
Target Sequence 
GCAGCCCTCTGTTAAGATCTTGTATTCTAATTGCAGTAATGCTTTGGAAGAAGACTTAAGGACAGTAGAGGAGTGGTCAT
CCAAATATAGGGCTGAAGAGTTGTACATGATGAGGCGTCAAATAGATGAGCTTATTNTAAGCCTCAACTCAGCTAGGGAT
AATTTTCCACTTTCTTGCTCTTCCCTCCAGGGAATGTACCTCTCATCCCTAGAGCGTTGACTTGAAAATGAGATAAGCTC
GGATCATGTCCTCATGCCCTAATACCTGTGCATACACAGTTTTAATATTCTTTCAGTGAACTCATTGACCATCTCATAAG
TAAACTGCAATACATTGGGCTTGTCTTTTGCCGTCAAAAGACAGAGTGGCATCGAAATGGAGTAATGGAACAGAGCAATG
GTGGATCCAGCTACCAGTGAATTCTGGCTCATTATGCTTTCGGTAGTAGGTTGTTTTATTCAACCATCTGGTTATCTACT
TCATACAGTATTTGACATCTCGCTGTATCTCTGAAGAATTAGGTGATCCTGCTTGCAGTCTGTATCCTGGTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis