Browse Element(s) Details


Os.17524.2.S1_x_at

Description gb:AK102708.1
DB_XREF= gi:32987917
TID=Os.17524.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033104F07, full insert sequence.
FL= gb:AK102708.1 gb:AK058789.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0376011/11S-ribonuclease binding protein SBP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03700Os.28399.1.S1_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S2_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S3_at11/112+1550813..1553359expressed protein
LOC_Os02g03710Os.56074.1.S1_at11/112+1558479..1559143expressed protein
LOC_Os02g03720Os.27754.1.S1_at11/112+1560693..1563282expressed protein
LOC_Os02g03730Os.10628.1.S1_at10/112+1563426..1565446SWIB/MDM2 domain containing protein, expressed
LOC_Os02g03740Os.10679.1.S1_at11/112+1566119..1569511Glutamine amidotransferase subunit pdxT, putative, expressed
LOC_Os02g03750Os.54804.1.S1_at11/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03750Os.46647.1.S1_at1/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03760Os.17524.1.S1_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03760Os.17524.2.S1_x_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03770NANA2+1589008..1589945hypothetical protein
LOC_Os02g03780OsAffx.11881.1.S1_at11/112+1593186..1593406hypothetical protein
LOC_Os02g03790Os.39971.1.A1_at11/112+1594601..1599297expressed protein
LOC_Os02g03800OsAffx.2494.1.S1_at9/112+1600394..1601422expressed protein
LOC_Os02g03810OsAffx.24088.1.S1_at11/112+1601977..1603063F-box domain containing protein
LOC_Os02g03820Os.54258.1.S1_at11/112+1603372..1607211expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17524.2.S1_x_at--327--291Chr02:1576479..1576503 (25 bp)
ATAGCAGCAATCTCACCAGGGAAGG
LOC_Os02g03760
Os.17524.2.S1_x_at--58--8151Chr02:1576436..1576460 (25 bp)
GGACAACACAGCTTCCAGTCAGAAT
LOC_Os02g03760
Os.17524.2.S1_x_at--810--1751Chr02:1576281..1576305 (25 bp)
ACCTCTGCTTGTGTGCTGATTGCGA
LOC_Os02g03760
Os.17524.2.S1_x_at--774--2411Chr02:1576255..1576279 (25 bp)
AAAAATGCTGACGTGTGCCCTGTCT
LOC_Os02g03760
Os.17524.2.S1_x_at--1030--4911Chr02:1576227..1576251 (25 bp)
GCTTCCCCAAGAGTTGCAGCGTTGA
LOC_Os02g03760
Os.17524.2.S1_x_at--150--9611Chr02:1576168..1576192 (25 bp)
TCATCAGCTTAGACAGTGGTACACT
LOC_Os02g03760
Os.17524.2.S1_x_at--1160--331Chr02:1576133..1576157 (25 bp)
ATACAAAGCTAAATCTCTCTGCCCC
LOC_Os02g03760
Os.17524.2.S1_x_at--279--4191Chr02:1576103..1576127 (25 bp)
CCCTTCCAGTTGTCATTCTTACATG
LOC_Os02g03760
Os.17524.2.S1_x_at--1027--811Chr02:1576044..1576068 (25 bp)
ATGGTCCTCCAGAGTCTCTTGATAA
LOC_Os02g03760
Os.17524.2.S1_x_at--1160--5391Chr02:1576002..1576026 (25 bp)
GAAGCTGTTACATGTCACATCCATA
LOC_Os02g03760
Os.17524.2.S1_x_at--878--2311Chr02:1575970..1575994 (25 bp)
AAAGGTTATCATCCTGCCAACGTTG
LOC_Os02g03760
Target Sequence 
ATAGCAGCAATCTCACCAGGGAAGGCTCTGGCGACAGCGAAGTGGACAACACAGCTTCCAGTCAGAATGTCAATGCTGTG
CCTGGGGTTTTCTTCCAGTCAGGCCTCCTCGGCATCAACAGCATGGCTGATGGTGGGCTGGGAGCATGCAGGTTGTGCAG
AATGAAGGAGGCAGCGGTGCTGGTGATGCCGTGTCGACACCTCTGCTTGTGTGCTGATTGCGAGAAAAATGCTGACGTGT
GCCCTGTCTGCCGCTTCCCCAAGAGTTGCAGCGTTGAGATCAACATGTCATAGCTAGCAACAGCCTTATAATCATCAGCT
TAGACAGTGGTACACTGAAGCCGTATATACAAAGCTAAATCTCTCTGCCCCTCCCCCCCTTCCAGTTGTCATTCTTACAT
GGTGTGTAGATTTGTTGATTGGGACTATGGAAGCTATGGTCCTCCAGAGTCTCTTGATAACCATATATATAGTTTTAGAA
GCTGTTACATGTCACATCCATATCAGAAAAAAGGTTATCATCCTGCCAACGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17524.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis